RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 TMEM116Q8NCL8 245 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 MOB3AQ96BX8 217 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 MIEN1Q9BRT3 115 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ROS1P08922 2347 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ODAMA1E959 279 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 POM121BA6NF01 834 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 SH2D7A6NKC9 451 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 GDF1P27539 372 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 PMELP40967 661 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 NWD2Q9ULI1 1742 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 PRSS1P07477 247 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 UCP3P55916 312 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 RPS11P62280 158 aaKnown RBP eCLIP6.41□□□□□ -1.38
VPS53-204ENST00000437048 ALKAL1Q6UXT8 129 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 OVOL2Q9BRP0 275 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 UBE2L5PA0A1B0GUS4 154 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 FAM71F2Q6NXP2 309 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 TP53INP2Q8IXH6 220 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 BHLHE23Q8NDY6 225 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 OR1F12Q8NHA8 337 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 SIGLEC11Q96RL6 698 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 FAM117AQ9C073 453 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 HSF4Q9ULV5 492 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 STARD10Q9Y365 291 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 PRRX1P54821 245 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 C1QL4Q86Z23 238 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ZNF511Q8NB15 262 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 MOGAT1Q96PD6 335 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 RGPD2P0DJD1 1756 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 NKX2-2O95096 273 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 SLC2A10O95528 541 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 CA2P00918 260 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 MYOGP15173 224 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 LRRC10Q5BKY1 277 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 S100A7L2Q5SY68 101 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 DMKNQ6E0U4 476 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 ADAT3Q96EY9 351 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 FAM103A1Q9BTL3 118 aaKnown RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 SF3B5Q9BWJ5 86 aaKnown RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 TXNRD2Q9NNW7 524 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 GLI3P10071 1580 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 SDCBPO00560 298 aaPredicted RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 PTGESO14684 152 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 ZFPL1O95159 310 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 SEC13P55735 322 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 KLK6Q92876 244 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 RCC2Q9P258 522 aaKnown RBP6.41□□□□□ -1.38
VPS53-204ENST00000437048 PHLPP1O60346 1717 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 hADV38S2A0JD32 116 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 NEURL1O76050 574 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 CD70P32970 193 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 P2RY2P41231 377 aa6.41□□□□□ -1.38
VPS53-204ENST00000437048 IGLV3-16A0A075B6K0 115 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 SERTM2A0A1B0GWG4 89 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 MEF2CQ06413 473 aaPredicted RBP6.4□□□□□ -1.38
VPS53-204ENST00000437048 TMEM267Q0VDI3 215 aaPredicted RBP6.4□□□□□ -1.38
VPS53-204ENST00000437048 D2HGDHQ8N465 521 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 SLC16A11Q8NCK7 471 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 ATOH1Q92858 354 aaPredicted RBP6.4□□□□□ -1.38
VPS53-204ENST00000437048 PSG11Q9UQ72 335 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 CDC14BO60729 498 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 MLF1P58340 268 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 NHLRC3Q5JS37 347 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 C17orf47Q8NEP4 570 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 OR6C1Q96RD1 312 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 AP5S1Q9NUS5 200 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 SLC25A37Q9NYZ2 338 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 PPP6CO00743 305 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 SCO1O75880 301 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 ARG1P05089 322 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 NDUFAF3Q9BU61 184 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 LEPROTL1O95214 131 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 OR13G1Q8NGZ3 307 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 MMP25Q9NPA2 562 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 PLEKHB1Q9UF11 243 aaPredicted RBP6.4□□□□□ -1.38
VPS53-204ENST00000437048 HEATR5AQ86XA9 2040 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 PLCE1Q9P212 2302 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 ZNF716A6NP11 495 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 IGLV3-25P01717 112 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 CEBPDP49716 269 aaPredicted RBP6.4□□□□□ -1.38
VPS53-204ENST00000437048 OR8B3Q8NGG8 313 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 CRYAAP02489 173 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 NNATQ16517 81 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 NTNG1Q9Y2I2 539 aa6.4□□□□□ -1.38
VPS53-204ENST00000437048 DOCK1Q14185 1865 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 DNAJC25-GNG10A0A024R161 153 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 KIR3DL2P43630 455 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 GGTLC2Q14390 218 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 MRPL32Q9BYC8 188 aaKnown RBP6.4□□□□□ -1.39
VPS53-204ENST00000437048 TCRBV21S2A2A0A5A6 115 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 GLIPR1P48060 266 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 GABRA6Q16445 453 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 FAM78BQ5VT40 261 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 ACSM5Q6NUN0 579 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 PAQR6Q6TCH4 344 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 CALHM1Q8IU99 346 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 C11orf42Q8N5U0 333 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 DOCK6Q96HP0 2047 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 A0A1B0GTH9 108 aa6.4□□□□□ -1.39
VPS53-204ENST00000437048 FAM171A2A8MVW0 826 aa6.4□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms