RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 ZNF286AQ9HBT8 521 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 SLC7A10Q9NS82 523 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 TMA7Q9Y2S6 64 aaKnown RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 ABCA12Q86UK0 2595 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 NUDT19A8MXV4 375 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 KLRC4-KLRK1H3BQV0 150 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 C19orf84I3L1E1 186 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 TAAR5O14804 337 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 CST4P01036 141 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 IFNA21P01568 189 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 UCP3P55916 312 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 RBM11P57052 281 aaKnown RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 PPIAP62937 165 aaKnown RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 PLGLB1Q02325 96 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 SRSF7Q16629 238 aaKnown RBP eCLIP12.72□□□□□ -0.37
USP4-203ENST00000415188 UQCC3Q6UW78 93 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 Q6ZS49 121 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 FBXL14Q8N1E6 418 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 TMEM251Q8N6I4 163 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 ZFP62Q8NB50 900 aaPredicted RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 RELL2Q8NC24 303 aaPredicted RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 OR10AD1Q8NGE0 317 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 PIGCQ92535 297 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 APH1AQ96BI3 265 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 ZNF75AQ96N20 296 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 SULT4A1Q9BR01 284 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 FAAP24Q9BTP7 215 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 PIGMQ9H3S5 423 aa12.72□□□□□ -0.37
USP4-203ENST00000415188 BARX1Q9HBU1 254 aaPredicted RBP12.72□□□□□ -0.37
USP4-203ENST00000415188 FBN2P35556 2912 aa12.71□□□□□ -0.37
USP4-203ENST00000415188 GTF3C1Q12789 2109 aa12.71□□□□□ -0.37
USP4-203ENST00000415188 IGKV1D-8A0A087WSZ0 117 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 IGKV1-12A0A0C4DH73 117 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 FGF16O43320 207 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 ADAP1O75689 374 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 IGKV1D-12P01611 117 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 ZNF728P0DKX0 622 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 PI3P19957 117 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 FUT3P21217 361 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 ELP2Q6IA86 826 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 TMEM200AQ86VY9 491 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 CPEB3Q8NE35 698 aaKnown RBP12.71□□□□□ -0.38
USP4-203ENST00000415188 FNDC9Q8TBE3 224 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 GALNT14Q96FL9 552 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 DMRTA2Q96SC8 542 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 REPIN1Q9BWE0 567 aaKnown RBP12.71□□□□□ -0.38
USP4-203ENST00000415188 PRRG4Q9BZD6 226 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 SLC6A15Q9H2J7 730 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 ACKR4Q9NPB9 350 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 C12orf4Q9NQ89 552 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 ST3GAL6Q9Y274 331 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 KCNIP3Q9Y2W7 256 aa12.71□□□□□ -0.38
USP4-203ENST00000415188 APCP25054 2843 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 PQLC2LA1A4F0 135 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 RAB19A4D1S5 217 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 ZNF850A8MQ14 1090 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 FAM166BA8MTA8 275 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 H0YIZ8 118 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 TEX46H3BTG2 121 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 PRRG2O14669 202 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 MSTNO14793 375 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 SS18L1O75177 396 aaPredicted RBP12.7□□□□□ -0.38
USP4-203ENST00000415188 AGAP20933 346 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 GLP1RP43220 463 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 MAGEA5P43359 124 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 SRYQ05066 204 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 BEX5Q5H9J7 111 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 TUSC5Q8IXB3 177 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 BAP18Q8IXM2 172 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 LRTM2Q8N967 370 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 OR51F2Q8NH61 342 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 FAM57AQ8TBR7 257 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 HDHD3Q9BSH5 251 aaPredicted RBP12.7□□□□□ -0.38
USP4-203ENST00000415188 SUCNR1Q9BXA5 334 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 DEFB127Q9H1M4 99 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 GP6Q9HCN6 339 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 ZFP57Q9NU63 452 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 PKDREJQ9NTG1 2253 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 RTTNQ86VV8 2226 aa12.7□□□□□ -0.38
USP4-203ENST00000415188 GEMIN2O14893 280 aaKnown RBP12.69□□□□□ -0.38
USP4-203ENST00000415188 BET1O15155 118 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 CLDN14O95500 239 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 PLATP00750 562 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 KNG1P01042 644 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 CELA3AP09093 270 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 COX6B1P14854 86 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 RBM39Q14498 530 aaKnown RBP12.69□□□□□ -0.38
USP4-203ENST00000415188 SMCO1Q147U7 214 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 PIGYQ3MUY2 71 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 EIF5AL1Q6IS14 154 aaKnown RBP12.69□□□□□ -0.38
USP4-203ENST00000415188 MRPL21Q7Z2W9 205 aaKnown RBP12.69□□□□□ -0.38
USP4-203ENST00000415188 ZDHHC23Q8IYP9 409 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 ZNF611Q8N823 705 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 CCDC71LQ8N9Z2 235 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 OR56B2PQ8NGI1 322 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 CYYR1Q96J86 154 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 OR10C1Q96KK4 312 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 VKORC1Q9BQB6 163 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 NAA60Q9H7X0 242 aa12.69□□□□□ -0.38
USP4-203ENST00000415188 CALHM2Q9HA72 323 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms