RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 CUL9Q8IWT3 2517 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 INTS1Q8N201 2190 aaKnown RBP17.15■□□□□ 0.34
USP39-204ENST00000409766 HSPB6O14558 160 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 TNFSF13O75888 250 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 AANATQ16613 207 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 THOC7Q6I9Y2 204 aaKnown RBP17.15■□□□□ 0.34
USP39-204ENST00000409766 ZNF585AQ6P3V2 769 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 C17orf78Q8N4C9 275 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 SUMF2Q8NBJ7 301 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 GTF3AQ92664 365 aaKnown RBP17.15■□□□□ 0.34
USP39-204ENST00000409766 CXorf58Q96LI9 332 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 DMRTA2Q96SC8 542 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 RSRP1Q9BUV0 290 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 OR5AC2Q9NZP5 309 aa17.15■□□□□ 0.34
USP39-204ENST00000409766 PPYP01298 95 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 RAB32Q13637 225 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 TMEM187Q14656 261 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 OR1J1Q8NGS3 322 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 ARPC5LQ9BPX5 153 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 ZNF471Q9BX82 626 aaPredicted RBP17.14■□□□□ 0.34
USP39-204ENST00000409766 C1QTNF6Q9BXI9 259 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 RHOFQ9HBH0 211 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 CEP250Q9BV73 2442 aa17.14■□□□□ 0.34
USP39-204ENST00000409766 TRAV24A0A0B4J272 114 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 LRP5LA4QPB2 252 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 IQCF6A8MYZ5 107 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 AGFG2O95081 481 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 HOXC12P31275 282 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 HERV-K104P61576 105 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 PSG7Q13046 419 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 ALKBH6Q3KRA9 238 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 PHLDA2Q53GA4 152 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 NEK7Q8TDX7 302 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 REG4Q9BYZ8 158 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 IFT22Q9H7X7 185 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 GSKIPQ9P0R6 139 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 MEMO1Q9Y316 297 aa17.14■□□□□ 0.33
USP39-204ENST00000409766 hCG_1807616A0A1W2PRN6 198 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 C3orf80F5H4A9 247 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 PDGFAP04085 211 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SCTP09683 121 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 OR5AC1P0C628 307 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 IAH1Q2TAA2 248 aaPredicted RBP17.13■□□□□ 0.33
USP39-204ENST00000409766 SP6Q3SY56 376 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 Q6ZS92 163 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SEM1Q6ZVN7 128 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 C5orf24Q7Z6I8 188 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 OR5T2Q8NGG2 359 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 ANGPTL6Q8NI99 470 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 STARD4Q96DR4 205 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SVILO95425 2214 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 F5H0A9 414 aaPredicted RBP17.13■□□□□ 0.33
USP39-204ENST00000409766 I3L521 148 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 CGAP01215 116 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 GLAP06280 429 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 GGNBP1Q5YKI7 109 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 PDZD9Q8IXQ8 264 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 ZNF610Q8N9Z0 462 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SCCPDHQ8NBX0 429 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 OR1S1Q8NH92 325 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 MRPL24Q96A35 216 aaKnown RBP17.13■□□□□ 0.33
USP39-204ENST00000409766 PHYHIPLQ96FC7 376 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SYT3Q9BQG1 590 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 ADAT1Q9BUB4 502 aaKnown RBP17.13■□□□□ 0.33
USP39-204ENST00000409766 SUCNR1Q9BXA5 334 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 SLC25A32Q9H2D1 315 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 RIMS4Q9H426 269 aaPredicted RBP17.13■□□□□ 0.33
USP39-204ENST00000409766 RASL12Q9NYN1 266 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 ATP23Q9Y6H3 246 aa17.13■□□□□ 0.33
USP39-204ENST00000409766 KIR2DS1A0A191URI9 304 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 MBD3L4A6NDZ8 208 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 MBD3L3A6NE82 208 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 MBD3L5A6NJ08 208 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 TRDCB7Z8K6 153 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 HS3ST1O14792 307 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 KLK10O43240 276 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 WDR1O75083 606 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 PET100P0DJ07 73 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 EIF2S3P41091 472 aaKnown RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 KIR2DS4P43632 304 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 KIR2DS1Q14954 304 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 HERPUD1Q15011 391 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 CXorf67Q86X51 503 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 FAM219AQ8IW50 185 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 LRTM2Q8N967 370 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 RELL2Q8NC24 303 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 OR11L1Q8NGX0 322 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 MBD3L2Q8NHZ7 208 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 MRPL30Q8TCC3 161 aaKnown RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 KLF14Q8TD94 323 aaPredicted RBP17.12■□□□□ 0.33
USP39-204ENST00000409766 TUBD1Q9UJT1 453 aa17.12■□□□□ 0.33
USP39-204ENST00000409766 MGAQ8IWI9 3026 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 TRBV6-6A0A0A6YYG2 114 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 MFSD2BA6NFX1 497 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 MSGN1A6NI15 193 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 IFNA21P01568 189 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 TK1P04183 234 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 SELEP16581 610 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 ERVK11-1P61568 191 aa17.11■□□□□ 0.33
USP39-204ENST00000409766 C20orf204Q6ZNR8 217 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms