RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 PRNDQ9UKY0 176 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 H3BVH4 76 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 ZFPL1O95159 310 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 HTN1P15515 57 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 GALNSP34059 522 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 COL19A1Q14993 1142 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 CTF1Q16619 201 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 OR2T10Q8NGZ9 312 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 HMSDA8MTL9 139 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 KIR3DL2P43630 455 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 SF3B5Q9BWJ5 86 aaKnown RBP11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF665Q9H7R5 613 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 FBXL17Q9UF56 701 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 G6PCP35575 357 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 ID4P47928 161 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 SOX8P57073 446 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 RAC3P60763 192 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 CT55Q8WUE5 264 aa11.32□□□□□ -0.6
CCDC88C-204ENST00000389857 COL8A1P27658 744 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 C19orf57Q0VDD7 668 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF770Q6IQ21 691 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 NFAM1Q8NET5 270 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 RPS4Y2Q8TD47 263 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 SRD5A3Q9H8P0 318 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 ISLRO14498 428 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 HYAL1Q12794 435 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 PSG5Q15238 335 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 SURF2Q15527 256 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 CD300LDQ6UXZ3 194 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 FAM24BQ8N5W8 94 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 OR8B12Q8NGG6 310 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 OR8D4Q8NGM9 314 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 GPR27Q9NS67 375 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 KLF7O75840 302 aaPredicted RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 HPXP02790 462 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 YBX1P67809 324 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 HES3Q5TGS1 186 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 TRAV20A0A0B4J274 112 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 USP54Q70EL1 1684 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF343Q6P1L6 599 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 RSRP1Q9BUV0 290 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 PCOLCE2Q9UKZ9 415 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 VSIG4Q9Y279 399 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 ANKRD20A5PA0PJZ0 165 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 SLC25A42Q86VD7 318 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 STXBP6Q8NFX7 210 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 SNRNP40Q96DI7 357 aaKnown RBP11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 MSL2Q9HCI7 577 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 PIPOXQ9P0Z9 390 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 INSIG2Q9Y5U4 225 aa11.31□□□□□ -0.6
CCDC88C-204ENST00000389857 TMEM210A6NLX4 147 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CORTO00230 105 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CSN3P07498 182 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SPINK14Q6IE38 97 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 OR2I1PQ8NGU4 316 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 RNF7Q9UBF6 113 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SMPD2O60906 423 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 LSM6P62312 80 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF273Q14593 569 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 NUBPLQ8TB37 319 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CXorf1O96002 111 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 BSXQ3C1V8 233 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 OR10A7Q8NGE5 316 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 FLYWCH2Q96CP2 140 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 LINC00052Q96N35 136 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 DIRC2Q96SL1 478 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 ZNF71Q9NQZ8 489 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 PAPPA2Q9BXP8 1791 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 M0R3E3 92 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SYNGR2O43760 224 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 KCNMB1Q16558 191 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SSX8Q7RTT4 187 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 OR4P4Q8NGL7 312 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 PRR7Q8TB68 274 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 APOBEC4Q8WW27 367 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CRISPLD2Q9H0B8 497 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 WDR13Q9H1Z4 485 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 PGA4P0DJD7 388 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 PGA5P0DJD9 388 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SFTPCP11686 197 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CD82P27701 267 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CDKN2AP42771 156 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SCMH1Q96GD3 660 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 TMUB1Q9BVT8 246 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 VAX2Q9UIW0 290 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 UBE2L6O14933 153 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CTDSPLO15194 276 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 GZMHP20718 246 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 CD1BP29016 333 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 EPHA8P29322 1005 aaPredicted RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 SNRPEP62304 92 aaKnown RBP11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 RHNO1Q9BSD3 238 aa11.3□□□□□ -0.6
CCDC88C-204ENST00000389857 M0QZK8 103 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 GGCTO75223 188 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 PMELP40967 661 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 TMEM33P57088 247 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 HIST3H3Q16695 136 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 LHX9Q9NQ69 397 aa11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 SRSF10O75494 262 aaKnown RBP11.29□□□□□ -0.6
CCDC88C-204ENST00000389857 CD226Q15762 336 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms