RNA–Protein interactions for RNA: ENST00000374877.7

CCDC40-203, Transcript of coiled-coil domain containing 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC40, Length 3,544 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-203ENST00000374877 ANKRD37Q7Z713 158 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 PIP4P1Q86T03 277 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 TMEM217Q8N7C4 229 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 TP53RKQ96S44 253 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 PARD6AQ9NPB6 346 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 PARPBPQ9NWS1 579 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 IGHV3-15A0A0B4J1V0 119 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 IGSF23A1L1A6 192 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 NKX2-6A6NCS4 301 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 GEMIN2O14893 280 aaKnown RBP9.61□□□□□ -0.87
CCDC40-203ENST00000374877 SSSCA1O60232 199 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 OR2J2O76002 312 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 CST7O76096 145 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 NXPH3O95157 252 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 IGLV3-1P01715 115 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 ERVFRD-1P60508 538 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 GFI1BQ5VTD9 330 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 FBXL14Q8N1E6 418 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 NTNG2Q96CW9 530 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 GPR61Q9BZJ8 451 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 OPA3Q9H6K4 179 aa9.61□□□□□ -0.87
CCDC40-203ENST00000374877 COL27A1Q8IZC6 1860 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ZNF724A8MTY0 619 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HSD17B6O14756 317 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 MSX1P28360 303 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 NKX2-1P43699 371 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 NKX6-1P78426 367 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 PHYHD1Q5SRE7 291 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 PRAMEF20Q5VT98 475 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SPSB3Q6PJ21 355 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 BATF2Q8N1L9 274 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 LRTM2Q8N967 370 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ADPRHL1Q8NDY3 354 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SNIP1Q8TAD8 396 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ZPBPQ9BS86 351 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 GFOD1Q9NXC2 390 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 TMED3Q9Y3Q3 217 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 WSB1Q9Y6I7 421 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 A0A1B0GW64 132 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 PPP1R2P9O14990 202 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HSPA12AO43301 675 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BKO60814 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 TRGC2P03986 189 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BJP06899 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SRP19P09132 144 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BOP23527 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 DTYMKP23919 212 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 CTSSP25774 331 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BBP33778 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BDP58876 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 LSM6P62312 80 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BCP62807 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 VAMP2P63027 116 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 RUNX1Q01196 453 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 EIF3IQ13347 325 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ENDOGQ14249 297 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST3H3Q16695 136 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST2H2BEQ16778 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 RSPO1Q2MKA7 263 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 CCDC71LQ8N9Z2 235 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 OR5C1Q8NGR4 320 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BHQ93079 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 INTS12Q96CB8 462 aaKnown RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BNQ99877 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HIST1H2BMQ99879 126 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 NIPSNAP3BQ9BS92 247 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SMDT1Q9H4I9 107 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ZNF286AQ9HBT8 521 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 AQP7P3A6NL99 342 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 ZNF587BE7ETH6 402 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 AADACP22760 399 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SPIN3Q5JUX0 258 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 NFAM1Q8NET5 270 aaPredicted RBP9.6□□□□□ -0.87
CCDC40-203ENST00000374877 OR10AD1Q8NGE0 317 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 OR4D5Q8NGN0 318 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 KIAA1456Q9P272 454 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 HS3ST3B1Q9Y662 390 aa9.6□□□□□ -0.87
CCDC40-203ENST00000374877 SLC25A53Q5H9E4 307 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 TMEM171Q8WVE6 324 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 BORCS8Q96FH0 119 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 ZNF385AQ96PM9 386 aaKnown RBP9.59□□□□□ -0.87
CCDC40-203ENST00000374877 WDR54Q9H977 334 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 HSF4Q9ULV5 492 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 UBE2J1Q9Y385 318 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-203ENST00000374877 IGKV1-27A0A075B6S5 117 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 SEC14L6B5MCN3 397 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 ETV2O00321 342 aaPredicted RBP9.59□□□□□ -0.87
CCDC40-203ENST00000374877 PTGDSP41222 190 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 AKR1C8PQ5T2L2 129 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 OR2M3Q8NG83 312 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 SPTSSAQ969W0 71 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 TVP23CQ96ET8 276 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 GPHA2Q96T91 129 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 LOXL2Q9Y4K0 774 aa9.59□□□□□ -0.87
CCDC40-203ENST00000374877 C3orf85A0A1B0GTC6 90 aa9.59□□□□□ -0.88
CCDC40-203ENST00000374877 SCAF4O95104 1147 aaKnown RBP9.59□□□□□ -0.88
CCDC40-203ENST00000374877 F10P00742 488 aa9.59□□□□□ -0.88
CCDC40-203ENST00000374877 SOD3P08294 240 aa9.59□□□□□ -0.88
CCDC40-203ENST00000374877 RPL23AP62750 156 aaKnown RBP9.59□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms