RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 SLC22A10Q63ZE4 541 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 DRAM2Q6UX65 266 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PGAP1Q75T13 922 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 YRDCQ86U90 279 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 RAB43Q86YS6 212 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TUSC5Q8IXB3 177 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 STPG2Q8N412 459 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NKAIN3Q8N8D7 197 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZSCAN4Q8NAM6 433 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 PXT1Q8NFP0 134 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR5L2Q8NGL0 311 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR4D5Q8NGN0 318 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 STOML3Q8TAV4 291 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GLMPQ8WWB7 406 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NEU4Q8WWR8 484 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 METTL21AQ8WXB1 218 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR5P3Q8WZ94 311 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GTF3AQ92664 365 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 AKAP1Q92667 903 aaKnown RBP eCLIP1.93□□□□□ -2.1
VPS54-202ENST00000354504 EMG1Q92979 244 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 INTS12Q96CB8 462 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC25A36Q96CQ1 311 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ARHGAP5-AS1Q96IT6 56 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR5B2Q96R09 309 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CABLES2Q9BTV7 478 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 LINC00574Q9H8X3 128 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SEBOXQ9HB31 216 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 WFDC1Q9HC57 220 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PPP1R14DQ9NXH3 145 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PEMTQ9UBM1 199 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CLEC4AQ9UMR7 237 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 KLF2Q9Y5W3 355 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM14AQ9Y6G1 99 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 VPS13DQ5THJ4 4388 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 IGKV1D-13A0A0B4J2D9 117 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 A0A0G2JRQ6 117 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 LOC105371267A0A1B0GV96 52 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 A0A1W2PR80 420 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CRYM-AS1A6NIL9 109 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 C9JQL5 133 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 INMT-MINDY4F8WBC2 141 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NXPH3O95157 252 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RENP00797 406 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FCER2P06734 321 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GIPP09681 153 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR4E1P0C645 316 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 IGKV1-13P0DP09 117 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 BDKRB2P30411 391 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR3A2P47893 321 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SOX2P48431 317 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ART1P52961 327 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 COL10A1Q03692 680 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SPOCK1Q08629 439 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MAB21L1Q13394 359 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 EXOSC2Q13868 293 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM187Q14656 261 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GABRA6Q16445 453 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PNLIPRP3Q17RR3 467 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PIGYQ3MUY2 71 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FAHD2BQ6P2I3 314 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 FBXW12Q6X9E4 464 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PRIMA1Q86XR5 153 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CDK20Q8IZL9 346 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZNF680Q8NEM1 530 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FDCSPQ8NFU4 85 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR2AK2Q8NG84 335 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR4A4PQ8NGN8 299 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR1K1Q8NGR3 316 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 OR2V1Q8NHB1 315 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 ZNF563Q8TA94 476 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MRPL30Q8TCC3 161 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 SLC22A8Q8TCC7 542 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FAM222BQ8WU58 562 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM170AQ8WVE7 144 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 NUDCD2Q8WVJ2 157 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 TMEM234Q8WY98 164 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 STARD4Q96DR4 205 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 FAHD2AQ96GK7 314 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 RITA1Q96K30 269 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 CXorf58Q96LI9 332 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 JSRP1Q96MG2 331 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 GAL3ST1Q99999 423 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 AGMATQ9BSE5 352 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 GON7Q9BXV9 100 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 COMMD4Q9H0A8 199 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 PLSCR4Q9NRQ2 329 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 SERTAD4Q9NUC0 356 aa1.93□□□□□ -2.1
VPS54-202ENST00000354504 MRTO4Q9UKD2 239 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 MRPS7Q9Y2R9 242 aaKnown RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 UBE2J1Q9Y385 318 aaPredicted RBP1.93□□□□□ -2.1
VPS54-202ENST00000354504 TRAV6A0A075B6T7 132 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 MEIS3P1A6NDR6 274 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 NAP1L6A6NFF2 107 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 C15orf65H3BRN8 121 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 ARPC1BO15143 372 aaKnown RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 SMPD2O60906 423 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 NOS1APO75052 506 aaPredicted RBP1.92□□□□□ -2.1
VPS54-202ENST00000354504 TMCC2O75069 709 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 CCNKO75909 580 aa1.92□□□□□ -2.1
VPS54-202ENST00000354504 KRT33AO76009 404 aa1.92□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms