RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 A0A0U1RQV5 110 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 FAM24AA6NFZ4 105 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 UMAD1C9J7I0 102 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 IGLV3-1P01715 115 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 SNCAP37840 140 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 LSM6P62312 80 aaKnown RBP8.7□□□□□ -1.02
LIG3-201ENST00000262327 OPN5Q6U736 354 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 Q6ZPA2 131 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 SLC16A14Q7RTX9 510 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 AGBL5Q8NDL9 886 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 C2orf88Q9BSF0 95 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 TMEM9BQ9NQ34 198 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 FAM212BQ9NTI7 297 aaPredicted RBP8.7□□□□□ -1.02
LIG3-201ENST00000262327 TUBD1Q9UJT1 453 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 ST3GAL6Q9Y274 331 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 A0A0G2JMM0 328 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 A0A1W2PPB8 328 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 A0A1W2PRS3 328 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 KIR3DP1A8MWS1 328 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 ZIC3O60481 467 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 ZNF32P17041 273 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 CCNOP22674 350 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 CCL20P78556 96 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 H3F3AP84243 136 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 FAM189A2Q15884 450 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 TMEM123Q8N131 208 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 PRR18Q8N4B5 295 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 ZNF561Q8N587 486 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 FADS6Q8N9I5 356 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 ADPRHL1Q8NDY3 354 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 CCDC54Q8NEL0 328 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 DTD1Q8TEA8 209 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 SPTSSAQ969W0 71 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 TP53RKQ96S44 253 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 MRPL37Q9BZE1 423 aaKnown RBP8.7□□□□□ -1.02
LIG3-201ENST00000262327 PRDM13Q9H4Q3 707 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 NECAP2Q9NVZ3 263 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 GFOD1Q9NXC2 390 aa8.7□□□□□ -1.02
LIG3-201ENST00000262327 PTRH2Q9Y3E5 179 aaKnown RBP8.7□□□□□ -1.02
LIG3-201ENST00000262327 IGLV3-32A0A0A0MS00 114 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 TP53I11O14683 189 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 TNFSF12O43508 249 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 OR7C1O76099 320 aaPredicted RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 AADACP22760 399 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 NPBWR2P48146 333 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZNF84P51523 738 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 SURF2Q15527 256 aaPredicted RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 NSUN5P2Q63ZY6 315 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZNF385CQ66K41 422 aaPredicted RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 TMEM217Q8N7C4 229 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZFP62Q8NB50 900 aaPredicted RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 SUCNR1Q9BXA5 334 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZNF442Q9H7R0 627 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 C19orf12Q9NSK7 152 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 TIMM10BQ9Y5J6 103 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 DIDO1Q9BTC0 2240 aaKnown RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 A0A087X0M5 115 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 A0A1B0GX30 115 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 E5RGE8 158 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 CCL2P13500 99 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 AGAP20933 346 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 DUSP1P28562 367 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 DDTP30046 118 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ALDH3B1P43353 468 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 GNG10P50151 68 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 COTL1Q14019 142 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 USF2Q15853 346 aaPredicted RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 SPIN3Q5JUX0 258 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 SLC35G3Q8N808 338 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 UBAC2Q8NBM4 344 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 MR1Q95460 341 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 NSG2Q9Y328 171 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 NKX2-6A6NCS4 301 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 MARCH11A6NNE9 402 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZNF587BE7ETH6 402 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 DKK1O94907 266 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 NRASP01111 189 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 DANCRP0C864 163 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 JMJD7P0C870 316 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 CHATP28329 748 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 FAM3AP98173 230 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 ZNF92Q03936 586 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 PCOLCEQ15113 449 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 CALHM1Q8IU99 346 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 TMEM54Q969K7 222 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 HS3ST6Q96QI5 342 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 PRO1933Q9H354 126 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 UNKLQ9H9P5 680 aaKnown RBP8.69□□□□□ -1.02
LIG3-201ENST00000262327 PROK2Q9HC23 129 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 KPTNQ9Y664 436 aa8.69□□□□□ -1.02
LIG3-201ENST00000262327 NBEAQ8NFP9 2946 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 ZNF727A8MUV8 499 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 B4E171 279 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 CST7O76096 145 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 GAPDHP04406 335 aaKnown RBP8.68□□□□□ -1.02
LIG3-201ENST00000262327 CYC1P08574 325 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 CCL4P13236 92 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 CTSSP25774 331 aa8.68□□□□□ -1.02
LIG3-201ENST00000262327 ZNF133P52736 654 aaPredicted RBP8.68□□□□□ -1.02
LIG3-201ENST00000262327 PLCXD3Q63HM9 321 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms