RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 NRASP01111 189 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 DANCRP0C864 163 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 BCL3P20749 454 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 FBXW12Q6X9E4 464 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 Q6ZRM9 215 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 MAML2Q8IZL2 1156 aaPredicted RBP9.19□□□□□ -0.94
USP28-201ENST00000003302 ZNF552Q9H707 407 aaPredicted RBP9.19□□□□□ -0.94
USP28-201ENST00000003302 PLCE1Q9P212 2302 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 LRRC3CA6NJW4 275 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 SYNGR1O43759 233 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 TSPAN15O95858 294 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 CXCL1P09341 107 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 DVL1P1P54792 670 aaPredicted RBP9.19□□□□□ -0.94
USP28-201ENST00000003302 PDZD11Q5EBL8 140 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 ACER2Q5QJU3 275 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 SPSB3Q6PJ21 355 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 SH2D2AQ9NP31 389 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 EDARQ9UNE0 448 aa9.19□□□□□ -0.94
USP28-201ENST00000003302 PRH1P02810 166 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 CFIP05156 583 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 B2MP61769 119 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 RPS16P62249 146 aaKnown RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 FAM27BQ5VT28 67 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 PARP11Q9NR21 331 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 TRAV20A0A0B4J274 112 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 hCG_38984A0A1B0GV85 526 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 UMAD1C9J7I0 102 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 SULT1A1P50225 295 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 GPM6AP51674 278 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 RPS23P62266 143 aaKnown RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 ZNF154Q13106 437 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 RIF1Q5UIP0 2472 aaKnown RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 GAPTQ8N292 157 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 OR10D3Q8NH80 312 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 OR1F12Q8NHA8 337 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 PP6455Q8WZ26 134 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 DNAJB11Q9UBS4 358 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 DKKL1Q9UK85 242 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 LIPGQ9Y5X9 500 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 ANKRD11Q6UB99 2663 aaPredicted RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 HSD17B6O14756 317 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 PPYP01298 95 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 ATP6V0CP27449 155 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 EWSR1Q01844 656 aaKnown RBP eCLIP9.18□□□□□ -0.94
USP28-201ENST00000003302 EIF2S3LQ2VIR3 472 aaKnown RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 UBAC2Q8NBM4 344 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 IFI44Q8TCB0 444 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 SAT2Q96F10 170 aaPredicted RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 BORCS8Q96FH0 119 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 SSX3Q99909 188 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 CCL28Q9NRJ3 127 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 TMEM38BQ9NVV0 291 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 PISDQ9UG56 409 aa9.18□□□□□ -0.94
USP28-201ENST00000003302 HEATR1Q9H583 2144 aaKnown RBP9.18□□□□□ -0.94
USP28-201ENST00000003302 CLN5O75503 358 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ERVFRD-1P60508 538 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 TRIM61Q5EBN2 209 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 PLCXD3Q63HM9 321 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 LIAT1Q6ZQX7 453 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 TIPARPQ7Z3E1 657 aaKnown RBP9.17□□□□□ -0.94
USP28-201ENST00000003302 BOD1Q96IK1 185 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ZNF442Q9H7R0 627 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 C19orf12Q9NSK7 152 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 MTCH1Q9NZJ7 389 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ADAM20O43506 726 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 MSX1P28360 303 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 CAMLGP49069 296 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 RBP2P50120 134 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 SPATA46Q5T0L3 261 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 RPS19BP1Q86WX3 136 aaKnown RBP9.17□□□□□ -0.94
USP28-201ENST00000003302 OR1K1Q8NGR3 316 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OR14L1PQ8NHC6 308 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 PLPPR1Q8TBJ4 325 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 C11orf1Q9H5F2 150 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 GSN-AS1Q9NRJ2 163 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 KIAA1324LA8MWY0 1029 aaPredicted RBP9.17□□□□□ -0.94
USP28-201ENST00000003302 NDUFS6O75380 124 aaKnown RBP9.17□□□□□ -0.94
USP28-201ENST00000003302 RHBDL1O75783 438 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 HEXAP06865 529 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OTX2P32243 289 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ACTBL2Q562R1 376 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 FOXL2NBQ6ZUU3 175 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 TBC1D26Q86UD7 250 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OSR2Q8N2R0 312 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 PRR18Q8N4B5 295 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ADPRHL1Q8NDY3 354 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OR4D5Q8NGN0 318 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ANGPTL4Q9BY76 406 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ARV1Q9H2C2 271 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 NIT2Q9NQR4 276 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 NSG1A0A0A6YYJ2 146 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OR6C6A6NF89 314 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 SNAPC5O75971 98 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 SWI5Q1ZZU3 235 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 ABCA11PQ4W5N1 156 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 KMT5CQ86Y97 462 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 TDHQ8IZJ6 230 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 OR56B2PQ8NGI1 322 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 PSMF1Q92530 271 aa9.17□□□□□ -0.94
USP28-201ENST00000003302 EGLN1Q9GZT9 426 aa9.17□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms