RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SMIM8Q96KF7 97 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C9orf72Q96LT7 481 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 JSRP1Q96MG2 331 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CHP1Q99653 195 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 BPIFA3Q9BQP9 254 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HSPB9Q9BQS6 159 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 Q9BRP9 147 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF471Q9BX82 626 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C1QTNF6Q9BXI9 259 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MRPL32Q9BYC8 188 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TSGA10Q9BZW7 698 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NAA50Q9GZZ1 169 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 GABARAPL1Q9H0R8 117 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CYSTM1Q9H1C7 97 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ELOVL6Q9H5J4 265 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CCNB1IP1Q9NPC3 277 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 TUBG2Q9NRH3 451 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C20orf96Q9NUD7 363 aaPredicted RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 NMRK1Q9NWW6 199 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 FAM206AQ9NX38 181 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZMAT5Q9UDW3 170 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 SLC23A2Q9UGH3 650 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 CYB5R1Q9UHQ9 305 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PRO0628Q9UI54 55 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 RPUSD1Q9UJJ7 312 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 VPREB3Q9UKI3 123 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HPCAL4Q9UM19 191 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MRPS16Q9Y3D3 137 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HEY1Q9Y5J3 304 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OR51B4Q9Y5P0 310 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 INSIG2Q9Y5U4 225 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MTCH2Q9Y6C9 303 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ZNF780BQ9Y6R6 833 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 LRP2P98164 4655 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 HMCN2Q8NDA2 5059 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 ASH1LQ9NR48 2969 aaKnown RBP-0.01□□□□□ -2.41
VPS35-212ENST00000640313 C2orf16Q68DN1 1984 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 OTOFQ9HC10 1997 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 PLXNA3P51805 1871 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 MYCBP2O75592 4640 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 COL18A1P39060 1754 aa-0.01□□□□□ -2.41
VPS35-212ENST00000640313 COL4A1P02462 1669 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FREM1Q5H8C1 2179 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 BAZ2BQ9UIF8 2168 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RTEL1-TNFRSF6BF6WH68 1400 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 NPHP4O75161 1426 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ATRNO75882 1429 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 NOS1P29475 1434 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MEGF8Q7Z7M0 2845 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SBNO1A3KN83 1393 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 POLR3AO14802 1390 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 NSD2O96028 1365 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 TRPM6Q9BX84 2022 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAT1Q14517 4588 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGLV3-9A0A075B6K5 115 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 A0A075B6Q4 140 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGKV1-12A0A0C4DH73 117 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FAM240AA0A1B0GVK7 77 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SERTM2A0A1B0GWG4 89 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC5A10A0PJK1 596 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGSF23A1L1A6 192 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGKV2-29A2NJV5 120 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RBFOX3A6NFN3 312 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ERICH4A6NGS2 130 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR2AT4A6NND4 320 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 A8MUN3 132 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ZNF705FA8MVS1 300 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 F5H5T6 163 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PLPP3O14495 311 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 LSM1O15116 133 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 RNF113AO15541 343 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SLC25A20O43772 301 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PSIP1O75475 530 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ERLIN1O75477 346 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CRTAPO75718 401 aaPredicted RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CIB2O75838 187 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SNX4O95219 450 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 GPR75O95800 540 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 EPPINO95925 133 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PTTG1O95997 202 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CA2P00918 260 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 LTAP01374 205 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 IGKV1D-12P01611 117 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CD8AP01732 235 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PTMAP06454 111 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CDK1P06493 297 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 SOD3P08294 240 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 FGF4P08620 206 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 KRT16P08779 473 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR5AL1P0C617 328 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 OR12D1P0DN82 309 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 PSKH1P11801 424 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 EIF2S2P20042 333 aaKnown RBP-0.02□□□□□ -2.41
VPS35-212ENST00000640313 ELK4P28324 431 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 GABRR2P28476 465 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CSKP41240 450 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MAGEA6P43360 314 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 GPR1P46091 355 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 CLDN8P56748 225 aa-0.02□□□□□ -2.41
VPS35-212ENST00000640313 MTPNP58546 118 aa-0.02□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms