RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 DNAAF1Q8NEP3 725 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 OR4X2Q8NGF9 303 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 RNF166Q96A37 237 aaPredicted RBP13.02□□□□□ -0.33
CLN3-264ENST00000637985 RNFT2Q96EX2 444 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 BORCS8Q96FH0 119 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 CEP19Q96LK0 163 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 RCHY1Q96PM5 261 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 MYCBPQ99417 103 aaPredicted RBP13.02□□□□□ -0.33
CLN3-264ENST00000637985 MTCH1Q9NZJ7 389 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 HERC2O95714 4834 aa13.02□□□□□ -0.33
CLN3-264ENST00000637985 IGKV1-27A0A075B6S5 117 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 DAPL1A0PJW8 107 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 H3BSH0 61 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 K7N7A8 449 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 ISG15P05161 165 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 CHATP28329 748 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 KIR3DL2P43630 455 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 THBS3P49746 956 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 ZIK1Q3SY52 487 aaPredicted RBP13.01□□□□□ -0.33
CLN3-264ENST00000637985 Q8IYB0 196 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 BATF2Q8N1L9 274 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 OR4M1Q8NGD0 313 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 OR2G2Q8NGZ5 317 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 SEBOXQ9HB31 216 aaPredicted RBP13.01□□□□□ -0.33
CLN3-264ENST00000637985 DSCAML1Q8TD84 2053 aa13.01□□□□□ -0.33
CLN3-264ENST00000637985 SLC16A6O15403 523 aa13□□□□□ -0.33
CLN3-264ENST00000637985 COX7A1P24310 79 aa13□□□□□ -0.33
CLN3-264ENST00000637985 RBP2P50120 134 aa13□□□□□ -0.33
CLN3-264ENST00000637985 CCR9P51686 369 aa13□□□□□ -0.33
CLN3-264ENST00000637985 DYNLT3P51808 116 aa13□□□□□ -0.33
CLN3-264ENST00000637985 ATP1B3P54709 279 aa13□□□□□ -0.33
CLN3-264ENST00000637985 ERVFRD-1P60508 538 aa13□□□□□ -0.33
CLN3-264ENST00000637985 KHDC1LQ5JSQ8 128 aa13□□□□□ -0.33
CLN3-264ENST00000637985 C10orf99Q6UWK7 81 aa13□□□□□ -0.33
CLN3-264ENST00000637985 SLC25A26Q70HW3 274 aa13□□□□□ -0.33
CLN3-264ENST00000637985 UTS2BQ765I0 119 aa13□□□□□ -0.33
CLN3-264ENST00000637985 EGFL6Q8IUX8 553 aa13□□□□□ -0.33
CLN3-264ENST00000637985 ENTHD1Q8IYW4 607 aa13□□□□□ -0.33
CLN3-264ENST00000637985 RDH10Q8IZV5 341 aa13□□□□□ -0.33
CLN3-264ENST00000637985 CBR4Q8N4T8 237 aa13□□□□□ -0.33
CLN3-264ENST00000637985 ACBD7Q8N6N7 88 aa13□□□□□ -0.33
CLN3-264ENST00000637985 MALSU1Q96EH3 234 aa13□□□□□ -0.33
CLN3-264ENST00000637985 MRPL48Q96GC5 212 aaKnown RBP13□□□□□ -0.33
CLN3-264ENST00000637985 FRRS1LQ9P0K9 344 aa13□□□□□ -0.33
CLN3-264ENST00000637985 EXOGQ9Y2C4 368 aaKnown RBP13□□□□□ -0.33
CLN3-264ENST00000637985 MPZL2O60487 215 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 ZNF737O75373 536 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 CYB5AP00167 134 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 RBP4P02753 201 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 HTR1AP08908 422 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 PRKACBP22694 351 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 OR12D2P58182 307 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 ACTA2P62736 377 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 ACTG2P63267 376 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 ZNF273Q14593 569 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 SSX2Q16385 188 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 LDLRAD2Q5SZI1 272 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 ASCC1Q8N9N2 400 aaKnown RBP12.99□□□□□ -0.33
CLN3-264ENST00000637985 OR51D1Q8NGF3 324 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 SLAMF9Q96A28 289 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 FOXRED1Q96CU9 486 aaPredicted RBP12.99□□□□□ -0.33
CLN3-264ENST00000637985 SNX22Q96L94 193 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 PRR25Q96S07 402 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 MBOAT4Q96T53 435 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 C9orf16Q9BUW7 83 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 GMPPBQ9Y5P6 360 aa12.99□□□□□ -0.33
CLN3-264ENST00000637985 C17orf98A8MV24 154 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 F8VVB4 439 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 F8VWA3 439 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 CCL3L1P16619 93 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 ZNF20P17024 532 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 ATF1P18846 271 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 ZFAND6Q6FIF0 208 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 LHFPL2Q6ZUX7 228 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 GDPD3Q7L5L3 318 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 OR8H2Q8N162 312 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 SPSB1Q96BD6 273 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 FGGYQ96C11 551 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 ADAT3Q96EY9 351 aaPredicted RBP12.98□□□□□ -0.33
CLN3-264ENST00000637985 Q96MT0 163 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.98□□□□□ -0.33
CLN3-264ENST00000637985 HHLA2Q9UM44 414 aa12.98□□□□□ -0.33
CLN3-264ENST00000637985 TBL2Q9Y4P3 447 aaKnown RBP12.98□□□□□ -0.33
CLN3-264ENST00000637985 IGKV1-9A0A0C4DH69 117 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 J3QLW9 94 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 RPSAP08865 295 aaKnown RBP12.97□□□□□ -0.33
CLN3-264ENST00000637985 ZNF19P17023 458 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 GABRB1P18505 474 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 AZGP1P25311 298 aaKnown RBP12.97□□□□□ -0.33
CLN3-264ENST00000637985 DLX6P56179 175 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 MTCP1P56278 107 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 NANOS3P60323 173 aaKnown RBP12.97□□□□□ -0.33
CLN3-264ENST00000637985 MEF2CQ06413 473 aaPredicted RBP12.97□□□□□ -0.33
CLN3-264ENST00000637985 GALEQ14376 348 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 ADAMTSL5Q6ZMM2 481 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 EMG1Q92979 244 aaKnown RBP12.97□□□□□ -0.33
CLN3-264ENST00000637985 LGALS12Q96DT0 336 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 PELI1Q96FA3 418 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 ZNF649Q9BS31 505 aa12.97□□□□□ -0.33
CLN3-264ENST00000637985 S100A14Q9HCY8 104 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms