RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 MRPS28Q9Y2Q9 187 aaKnown RBP14.99□□□□□ -0.01
CLN3-243ENST00000635973 MAB21L2Q9Y586 359 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 INSIG2Q9Y5U4 225 aa14.99□□□□□ -0.01
CLN3-243ENST00000635973 GPR37O15354 613 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 HTR3BO95264 441 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 CSTBP04080 98 aaKnown RBP14.98□□□□□ -0.01
CLN3-243ENST00000635973 CHRM2P08172 466 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 CALRP27797 417 aaKnown RBP14.98□□□□□ -0.01
CLN3-243ENST00000635973 DUSP1P28562 367 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 MTNR1BP49286 362 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 GLT8D1Q68CQ7 371 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 CDH26Q8IXH8 852 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 CNTD2Q9H8S5 307 aa14.98□□□□□ -0.01
CLN3-243ENST00000635973 EXOSC4Q9NPD3 245 aaKnown RBP14.98□□□□□ -0.01
CLN3-243ENST00000635973 TMEM89A2RUT3 159 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 SH2D1BO14796 132 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 FCN3O75636 299 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 SERPINA2P20848 420 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 GABRR1P24046 479 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 GP2P55259 537 aaKnown RBP14.97□□□□□ -0.01
CLN3-243ENST00000635973 CAV3P56539 151 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 FGF12P61328 243 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 C11orf91Q3C1V1 193 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 SLC22A6Q4U2R8 563 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 LRRTM1Q86UE6 522 aa14.97□□□□□ -0.01
CLN3-243ENST00000635973 FOXRED1Q96CU9 486 aaPredicted RBP14.97□□□□□ -0.01
CLN3-243ENST00000635973 NR1H4Q96RI1 486 aaPredicted RBP14.97□□□□□ -0.01
CLN3-243ENST00000635973 PPIL3Q9H2H8 161 aaKnown RBP14.97□□□□□ -0.01
CLN3-243ENST00000635973 RPUSD1Q9UJJ7 312 aaKnown RBP14.97□□□□□ -0.01
CLN3-243ENST00000635973 A0A1W2PQ09 198 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 SIRPB1O00241 398 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 ZNF780AO75290 641 aaPredicted RBP14.96□□□□□ -0.01
CLN3-243ENST00000635973 FSHBP01225 129 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 LIPFP07098 398 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 ZNF44P15621 663 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 MYL9P24844 172 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 COMPP49747 757 aaPredicted RBP14.96□□□□□ -0.01
CLN3-243ENST00000635973 PAX2Q02962 417 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 SCN1BQ07699 218 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 ZNF146Q15072 292 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 SYT6Q5T7P8 510 aaPredicted RBP14.96□□□□□ -0.01
CLN3-243ENST00000635973 GLIPR1L1Q6UWM5 242 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 UQCC2Q9BRT2 126 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 MS4A7Q9GZW8 240 aaPredicted RBP14.96□□□□□ -0.01
CLN3-243ENST00000635973 PCDHB16Q9NRJ7 776 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 ONECUT1Q9UBC0 465 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 STUB1Q9UNE7 303 aa14.96□□□□□ -0.01
CLN3-243ENST00000635973 KIR2DS1A0A191URI9 304 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 TRDV1A0A1B0GX56 115 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 TK1P04183 234 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 UBA52P62987 128 aaKnown RBP14.95□□□□□ -0.02
CLN3-243ENST00000635973 GPR176Q14439 515 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 ELP2Q6IA86 826 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 FAM185AQ8N0U4 392 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 SIGLECL1Q8N7X8 197 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 ZDHHC22Q8N966 263 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 OR4D6Q8NGJ1 314 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 PPP1R35Q8TAP8 253 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 DCTN5Q9BTE1 182 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 FAM234AQ9H0X4 552 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 IL36GQ9NZH8 169 aa14.95□□□□□ -0.02
CLN3-243ENST00000635973 TRBV23-1A0A0A0MS06 115 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 K7N7A8 449 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 DEGS1O15121 323 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 OR2H2O95918 312 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 PPIAL4GP0DN37 164 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 GALP22466 123 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 PAX8Q06710 450 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 EDDM3AQ14507 147 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 GRK1Q15835 563 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 PIGYQ3MUY2 71 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 METTL11BQ5VVY1 283 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 C22orf42Q6IC83 251 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 CD200R1LQ6Q8B3 271 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 ASCL4Q6XD76 172 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 GDPD3Q7L5L3 318 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 OSR2Q8N2R0 312 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 TBC1D15Q8TC07 691 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 DACT3Q96B18 629 aaPredicted RBP14.94□□□□□ -0.02
CLN3-243ENST00000635973 SNX22Q96L94 193 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 CHST6Q9GZX3 395 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 PLGRKTQ9HBL7 147 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 ESM1Q9NQ30 184 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 ZNF69Q9UC07 566 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 SSR3Q9UNL2 185 aa14.94□□□□□ -0.02
CLN3-243ENST00000635973 AK6Q9Y3D8 172 aaKnown RBP14.94□□□□□ -0.02
CLN3-243ENST00000635973 PDCD5O14737 125 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 ZNF737O75373 536 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 GTF2F2P13984 249 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 CD36P16671 472 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 EDDM3BP56851 147 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 RPL31P62899 125 aaKnown RBP14.93□□□□□ -0.02
CLN3-243ENST00000635973 BAMBIQ13145 260 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 IL13RA2Q14627 380 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 PDCD1Q15116 288 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 CMTM4Q8IZR5 234 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 OR8H2Q8N162 312 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 CHST4Q8NCG5 386 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 OR4M1Q8NGD0 313 aa14.93□□□□□ -0.02
CLN3-243ENST00000635973 OR5D13Q8NGL4 314 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms