RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 TFR2Q9UP52 801 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 CFL2Q9Y281 166 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 AP3M1Q9Y2T2 418 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 COL4A2P08572 1712 aa0.46□□□□□ -2.34
SCN1A-208ENST00000625916 SBNO1A3KN83 1393 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 OR5H14A6NHG9 310 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 OR2AT4A6NND4 320 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 H7C2Y5 167 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 UPK2O00526 184 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 PLPP3O14495 311 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 GYG2O15488 501 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 ZNF189O75820 626 aaPredicted RBP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 RLN2P04090 185 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 SOD3P08294 240 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 LYNX1P0DP58 116 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 GABRA1P14867 456 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 CD9P21926 228 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 CD82P27701 267 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 CRABP1P29762 137 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 KRTAP10-4P60372 401 aaPredicted RBP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 IRF8Q02556 426 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 GPR176Q14439 515 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 HES1Q14469 280 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 IDNKQ5T6J7 187 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 UGT2A3Q6UWM9 527 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 SELENOHQ8IZQ5 122 aaKnown RBP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 FAM58AQ8N1B3 248 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 OR6K6Q8NGW6 343 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 OR4A5Q8NH83 315 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 TWIST2Q8WVJ9 160 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 MAL2Q969L2 176 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 RILPQ96NA2 401 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 QKIQ96PU8 341 aaKnown RBP eCLIP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 TSNAXQ99598 290 aaKnown RBP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 HSPB9Q9BQS6 159 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 ZNF251Q9BRH9 671 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 ULBP1Q9BZM6 244 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 ARMC7Q9H6L4 198 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 TDRD3Q9H7E2 651 aaKnown RBP0.45□□□□□ -2.34
SCN1A-208ENST00000625916 AUNIPQ9H7T9 357 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 PLEKHA1Q9HB21 404 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 URGCP-MRPS24S4R325 110 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 PTPRKQ15262 1439 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 DOCK10Q96BY6 2186 aa0.45□□□□□ -2.34
SCN1A-208ENST00000625916 SLIT2O94813 1529 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 RP1L1Q8IWN7 2480 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 A0A1B0GTI1 187 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CTAGE15A4D2H0 777 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 TRAPPC3O43617 180 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 DNAJB6O75190 326 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 PLEKHA8P1O95397 391 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 GYPCP04921 128 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 GPX1P07203 203 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 OR5AL1P0C617 328 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CPMP14384 443 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 PMCHP20382 165 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 PRTN3P24158 256 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CNTFRP26992 372 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 GABRR2P28476 465 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 IL12BP29460 328 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 MAGEA1P43355 309 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 GABRA4P48169 554 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 MLF1P58340 268 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 BNIP2Q12982 314 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 TOMM34Q15785 309 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CLEC12AQ5QGZ9 265 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 C10orf91Q5T1B1 145 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 FAM27D1Q5T7N8 215 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 SYT6Q5T7P8 510 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 ERICH5Q6P6B1 374 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 EPGNQ6UW88 154 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CTAGE6Q86UF2 777 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 CMTM8Q8IZV2 173 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 FER1L6-AS1Q8NA97 138 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 OR2M3Q8NG83 312 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 OR8D1Q8WZ84 308 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 OR52B2Q96RD2 323 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 MRPL32Q9BYC8 188 aaKnown RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 ZNF436Q9C0F3 470 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 COA1Q9GZY4 146 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 ARL6Q9H0F7 186 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 C12orf4Q9NQ89 552 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 SLC23A2Q9UGH3 650 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 PSORS1C2Q9UIG4 136 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 FLVCR2Q9UPI3 526 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 AMMECR1Q9Y4X0 333 aaPredicted RBP0.44□□□□□ -2.34
SCN1A-208ENST00000625916 SHANK3Q9BYB0 1731 aa0.44□□□□□ -2.34
SCN1A-208ENST00000625916 PXDNLA1KZ92 1463 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 A0A0J9YX75 114 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CCDC169A6NNP5 214 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 CENPXA8MT69 81 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 GOLGA8TH3BQL2 631 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 WRBO00258 174 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 LECT2O14960 151 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 TRAPPC6AO75865 159 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 NAPSAO96009 420 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 PRB4P10163 310 aaPredicted RBP0.43□□□□□ -2.34
SCN1A-208ENST00000625916 RALBP11234 206 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 IL18Q14116 193 aa0.43□□□□□ -2.34
SCN1A-208ENST00000625916 ZCWPW2Q504Y3 356 aa0.43□□□□□ -2.34
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms