RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 B9A039 149 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 LHBP01229 141 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 CD74P04233 296 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 CD3DP04234 171 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 EGR1P18146 543 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 GMFBP60983 142 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 SRSF1Q07955 248 aaKnown RBP eCLIP12.02□□□□□ -0.493e-6■■■■■ 29.6
USP39-220ENST00000613444 IKZF1Q13422 519 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 ARFRP1Q13795 201 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 Q6ZPA2 131 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 GCSAMQ8N6F7 178 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 OR4C16Q8NGL9 310 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 LRRC29Q8WV35 223 aa12.02□□□□□ -0.49
USP39-220ENST00000613444 RAI1Q7Z5J4 1906 aaPredicted RBP12.02□□□□□ -0.49
USP39-220ENST00000613444 hCG_1807616A0A1W2PRN6 198 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 TAS2R19P59542 299 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 SPIN3Q5JUX0 258 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 ATAD3CQ5T2N8 411 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 SFRP4Q6FHJ7 346 aaPredicted RBP12.01□□□□□ -0.49
USP39-220ENST00000613444 OR52W1Q6IF63 320 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 MMP28Q9H239 520 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 FN3KRPQ9HA64 309 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 NLKQ9UBE8 527 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 PLEKHA6Q9Y2H5 1048 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 FAM240BA0A1B0GVZ2 78 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 UBE2QL1A1L167 161 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 CENPXA8MT69 81 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 TPD52L2O43399 206 aaKnown RBP12.01□□□□□ -0.49
USP39-220ENST00000613444 GLRA1P23415 457 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 TNFSF4P23510 183 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 CCL8P80075 99 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 STEAP1BQ6NZ63 245 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 HOGA1Q86XE5 327 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 MUC15Q8N387 334 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 ENKURQ8TC29 256 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 Q8TCH9 128 aa12.01□□□□□ -0.49
USP39-220ENST00000613444 ZNF230Q9UIE0 474 aaPredicted RBP12.01□□□□□ -0.49
USP39-220ENST00000613444 NAP1L6A6NFF2 107 aa12□□□□□ -0.49
USP39-220ENST00000613444 OR2H2O95918 312 aa12□□□□□ -0.49
USP39-220ENST00000613444 AKAIN1P0CW23 69 aa12□□□□□ -0.49
USP39-220ENST00000613444 GIFP27352 417 aa12□□□□□ -0.49
USP39-220ENST00000613444 HLA-DMAP28067 261 aa12□□□□□ -0.49
USP39-220ENST00000613444 CBX5P45973 191 aa12□□□□□ -0.49
USP39-220ENST00000613444 CCR6P51684 374 aa12□□□□□ -0.49
USP39-220ENST00000613444 FAM209AQ5JX71 171 aa12□□□□□ -0.49
USP39-220ENST00000613444 TGIF2LYQ8IUE0 185 aa12□□□□□ -0.49
USP39-220ENST00000613444 SUMF2Q8NBJ7 301 aa12□□□□□ -0.49
USP39-220ENST00000613444 ERGIC1Q969X5 290 aa12□□□□□ -0.49
USP39-220ENST00000613444 CMSS1Q9BQ75 279 aaKnown RBP12□□□□□ -0.49
USP39-220ENST00000613444 SPACA1Q9HBV2 294 aa12□□□□□ -0.49
USP39-220ENST00000613444 IGKV1D-8A0A087WSZ0 117 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 ZNF736B4DX44 427 aaPredicted RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 SLC33A1O00400 549 aaPredicted RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 ZNF735P0CB33 412 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 UPRTQ96BW1 309 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 TINAGL1Q9GZM7 467 aaPredicted RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 IFT46Q9NQC8 304 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 RASL12Q9NYN1 266 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 RALYQ9UKM9 306 aaKnown RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 M0QYG6 137 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 HS3ST1O14792 307 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 DEGS1O15121 323 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 HAND1O96004 215 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 KNG1P01042 644 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 GLAP06280 429 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 DTYMKP23919 212 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 LMO1P25800 156 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 CEBPDP49716 269 aaPredicted RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 TESK1Q15569 626 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 BPIFB2Q8N4F0 458 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 MAFIPQ8WZ33 124 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 RDH5Q92781 318 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 DPCDQ9BVM2 203 aaPredicted RBP11.99□□□□□ -0.49
USP39-220ENST00000613444 CACNG6Q9BXT2 260 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 MS4A5Q9H3V2 200 aa11.99□□□□□ -0.49
USP39-220ENST00000613444 hCG_2014768A0A024R1R8 64 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 FAM221AA4D161 298 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 H3BUI4 141 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 HSPB6O14558 160 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 NAPSAO96009 420 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 FCGR3AP08637 254 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 SMIM21Q3B7S5 101 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 OR56B4Q8NH76 319 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 MARVELD1Q9BSK0 173 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 ST6GALNAC5Q9BVH7 336 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 DYNLRB1Q9NP97 96 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 MCUBQ9NWR8 336 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 DCAF16Q9NXF7 216 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 UTP20O75691 2785 aaKnown RBP11.98□□□□□ -0.49
USP39-220ENST00000613444 LRRK2Q5S007 2527 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 MCRIP1C9JLW8 97 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 SIRPB1O00241 398 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 SH2D1BO14796 132 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 RAB3DO95716 219 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 TFF1P04155 84 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 TCRBP04435 133 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 ZNF44P15621 663 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 TNFRSF1AP19438 455 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 HRH1P35367 487 aa11.98□□□□□ -0.49
USP39-220ENST00000613444 FAUP35544 74 aaKnown RBP11.98□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms