RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 AMMECR1LQ6DCA0 310 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 C11orf40Q8WZ69 217 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 GKN1Q9NS71 199 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 WRAP73Q9P2S5 460 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 A0A1B0GWB2 263 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 NKX2-6A6NCS4 301 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MMP23AO75900 390 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ZNF17P17021 662 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FAM27D1Q5T7N8 215 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ABHD14BQ96IU4 210 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 G6PC2Q9NQR9 355 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 VENTXO95231 258 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PNLIPP16233 465 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TMPRSS3P57727 454 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 INSM1Q01101 510 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TAF10Q12962 218 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SHHQ15465 462 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 OR5C1Q8NGR4 320 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MYBPHLA2RUH7 354 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 F8VVB4 439 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 F8VWA3 439 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 XRCC2O43543 280 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 F13BP05160 661 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RAB32Q13637 225 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 LDLRAD1Q5T700 205 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TPRG1Q6ZUI0 275 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RTN4RL2Q86UN3 420 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 OR5D13Q8NGL4 314 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MRPL24Q96A35 216 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RAET1LQ5VY80 246 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 OR2C3Q8N628 320 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MFRPQ9BY79 579 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ULBP3Q9BZM4 244 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 A0A0G2JMZ2 1700 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 LRRC37A2A6NM11 1700 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 INTS1Q8N201 2190 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ASPDHA6ND91 283 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 NCBP2LA6PVI3 153 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 GYPBP06028 91 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 BCL3P20749 454 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ROM1Q03395 351 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MSRB3Q8IXL7 192 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RARRES2Q99969 163 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 KCNK15Q9H427 330 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 FGF16O43320 207 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CST7O76096 145 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 MMP9P14780 707 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PLPP7Q8NBV4 271 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RAB37Q96AX2 223 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 IKZF5Q9H5V7 419 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CDH20Q9HBT6 801 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TMED7Q9Y3B3 224 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ACTL6AO96019 429 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 IRF2P14316 349 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SERF2P84101 59 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 C1orf53Q5VUE5 145 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 OR1L3Q8NH93 324 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 RCL1Q9Y2P8 373 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PRR33A8MZF0 331 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 APOBEC3AP31941 199 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TIAL1Q01085 375 aaKnown RBP eCLIP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PMVKQ15126 192 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CD300EQ496F6 205 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM255AQ5JRV8 349 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CLEC4DQ8WXI8 215 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TNFRSF13CQ96RJ3 184 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ABCA4P78363 2273 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 NRXN2Q9P2S2 1712 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ZNF816-ZNF321PA0A0X1KG74 233 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TNFSF11O14788 317 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ARSAP15289 507 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SIGLEC14Q08ET2 396 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PRR18Q8N4B5 295 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ARIH2OSQ8N7S6 290 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM170AQ8WVE7 144 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SIGLEC11Q96RL6 698 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 TNFRSF12AQ9NP84 129 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 HINT3Q9NQE9 182 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PHPT1Q9NRX4 125 aaPredicted RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 A1L4Q6 167 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PRSS3P2Q8NHM4 247 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ZG16BQ96DA0 208 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 PRRG4Q9BZD6 226 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 GPR62Q9BZJ7 368 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ELOVL2Q9NXB9 296 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 HS3ST2Q9Y278 367 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CACNA1AO00555 2505 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 LMX1BO60663 402 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 SLC37A1P57057 533 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 CES1P1Q9UKY3 287 aa4.42□□□□□ -1.7
VPS13D-213ENST00000613099 ZNF346Q9UL40 294 aaKnown RBP4.42□□□□□ -1.7
VPS13D-213ENST00000613099 BCAT2O15382 392 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-213ENST00000613099 OR7C1O76099 320 aaPredicted RBP4.41□□□□□ -1.7
VPS13D-213ENST00000613099 STATHP02808 62 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 TYMSP04818 313 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 TMEM207Q6UWW9 146 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 LINC01551Q86U37 167 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 AGBL5Q8NDL9 886 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 OR10S1Q8NGN2 331 aa4.41□□□□□ -1.7
VPS13D-213ENST00000613099 PTX4Q96A99 478 aa4.41□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 53.4 ms