RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 DUSP21Q9H596 190 aa15.92■□□□□ 0.14
UPF1-212ENST00000601689 GABRPO00591 440 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 GPX5O75715 221 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 PAHP00439 452 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 HSMCR30P0CW71 290 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 CALCBP10092 127 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 FSTP19883 344 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 CRHBPP24387 322 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 DUSP1P28562 367 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 PTGFRP43088 359 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 ERVFRD-1P60508 538 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 SRSF2Q01130 221 aaKnown RBP15.91■□□□□ 0.14
UPF1-212ENST00000601689 TRAM1Q15629 374 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 TMEM200BQ69YZ2 307 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 PDZD9Q8IXQ8 264 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 NKAIN3Q8N8D7 197 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 OR13C5Q8NGS8 318 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 SLITRK2Q9H156 845 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 UNKLQ9H9P5 680 aaKnown RBP15.91■□□□□ 0.14
UPF1-212ENST00000601689 TCF7L1Q9HCS4 588 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 C19orf12Q9NSK7 152 aa15.91■□□□□ 0.14
UPF1-212ENST00000601689 RRP15Q9Y3B9 282 aaKnown RBP15.91■□□□□ 0.14
UPF1-212ENST00000601689 IGKV1-12A0A0C4DH73 117 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 SIRPB1O00241 398 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 ZNF737O75373 536 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 HTR3BO95264 441 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 OR2H2O95918 312 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 IGKV1D-12P01611 117 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 UBE2E1P51965 193 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 RUSC1-AS1Q66K80 236 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 ELP2Q6IA86 826 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 TRAPPC6BQ86SZ2 158 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 CDH26Q8IXH8 852 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 PHC2Q8IXK0 858 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 JAGN1Q8N5M9 183 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 NR1H4Q96RI1 486 aaPredicted RBP15.9■□□□□ 0.14
UPF1-212ENST00000601689 CHST6Q9GZX3 395 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 ISYNA1Q9NPH2 558 aa15.9■□□□□ 0.14
UPF1-212ENST00000601689 A0A1W2PPK0 400 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 BTBD17A6NE02 478 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 MAS1P04201 325 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 FBP1P09467 338 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 IGFBP3P17936 291 aaPredicted RBP15.89■□□□□ 0.13
UPF1-212ENST00000601689 PSMA1P25786 263 aaKnown RBP15.89■□□□□ 0.13
UPF1-212ENST00000601689 LMO1P25800 156 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 ERP29P30040 261 aaKnown RBP15.89■□□□□ 0.13
UPF1-212ENST00000601689 RANBP1P43487 201 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 LGALS4P56470 323 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 RPS11P62280 158 aaKnown RBP eCLIP15.89■□□□□ 0.13
UPF1-212ENST00000601689 UBA52P62987 128 aaKnown RBP15.89■□□□□ 0.13
UPF1-212ENST00000601689 IL13RA2Q14627 380 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 DEFB112Q30KQ8 113 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 ACSM3Q53FZ2 586 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 Q8N7P7 452 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 ZDHHC22Q8N966 263 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 GCDHQ92947 438 aaPredicted RBP15.89■□□□□ 0.13
UPF1-212ENST00000601689 ZNF714Q96N38 554 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 DERL3Q96Q80 235 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 OR5M11Q96RB7 305 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 TMED9Q9BVK6 235 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 IL36RNQ9UBH0 155 aa15.89■□□□□ 0.13
UPF1-212ENST00000601689 TRBV5-7A0A0A0MS05 114 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 DNAJC9-AS1A6NH13 148 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 CLDN34H7C241 214 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 NPFFO15130 113 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 RBP4P02753 201 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 CRYBA1P05813 215 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 ZNF728P0DKX0 622 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 Q6YL49 198 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 C17orf107Q6ZR85 190 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 LINC00596Q86U02 117 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 OSR2Q8N2R0 312 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 OR13D1Q8NGV5 346 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 FOXRED1Q96CU9 486 aaPredicted RBP15.88■□□□□ 0.13
UPF1-212ENST00000601689 BARHL1Q9BZE3 327 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 DPAGT1Q9H3H5 408 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 IL36GQ9NZH8 169 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 LINC00312Q9Y6C7 94 aa15.88■□□□□ 0.13
UPF1-212ENST00000601689 DSCAML1Q8TD84 2053 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 TRGV10A0A0A0MS01 117 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 TMEM82A0PJX8 343 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 MEIOCA2RUB1 952 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 MRPS14O60783 128 aaKnown RBP15.87■□□□□ 0.13
UPF1-212ENST00000601689 GTF2F2P13984 249 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 OR3A4PP47883 348 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 MLLT11Q13015 90 aaPredicted RBP15.87■□□□□ 0.13
UPF1-212ENST00000601689 IRF3Q14653 427 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 SVOPQ8N4V2 548 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 TMEM86BQ8N661 226 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 OR4S1Q8NGB4 309 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 OR51T1Q8NGJ9 327 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 SSMEM1Q8WWF3 244 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 ZNF48Q96MX3 618 aaPredicted RBP15.87■□□□□ 0.13
UPF1-212ENST00000601689 GAL3ST2Q9H3Q3 398 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 PRDM13Q9H4Q3 707 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 ST3GAL6Q9Y274 331 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 UBE2J1Q9Y385 318 aaPredicted RBP15.87■□□□□ 0.13
UPF1-212ENST00000601689 POMT1Q9Y6A1 747 aa15.87■□□□□ 0.13
UPF1-212ENST00000601689 A0A0G2JK05 382 aa15.86■□□□□ 0.13
UPF1-212ENST00000601689 RNASEK-C17orf49H0YIS7 233 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms