RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 OPA3Q9H6K4 179 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 P4HTMQ9NXG6 502 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 LUZP4Q9P127 313 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 FAM24AA6NFZ4 105 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 CST7O76096 145 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 HTR5AP47898 357 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 SUMO3P55854 103 aaPredicted RBP13.3□□□□□ -0.28
UPF1-204ENST00000596842 SLC35A1P78382 337 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 HAS2Q92819 552 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 ELOVL1Q9BW60 279 aa13.3□□□□□ -0.28
UPF1-204ENST00000596842 A0A1W2PNV4 684 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 IGLV3-19P01714 112 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 MT-ND4LP03901 98 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 CCL3P10147 92 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 TMEM268Q5VZI3 342 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 BTNL8Q6UX41 500 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 MR1Q95460 341 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 RARRES2Q99969 163 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 OPN3Q9H1Y3 402 aaPredicted RBP13.29□□□□□ -0.28
UPF1-204ENST00000596842 WFDC1Q9HC57 220 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 ST3GAL6Q9Y274 331 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 CPAMD8Q8IZJ3 1885 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 SCGB1D1O95968 90 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 RAB5AP20339 215 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 KIAA2026Q5HYC2 2103 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 OR2T2Q6IF00 324 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 OPN5Q6U736 354 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 ABHD14AQ9BUJ0 271 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 FREM1Q5H8C1 2179 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 H3BP45 60 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 TP53I11O14683 189 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 TGOLN2O43493 480 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 IGHV2-70P01814 119 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 PTGDSP41222 190 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 CCL7P80098 99 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 GNMTQ14749 295 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 C17orf82Q86X59 251 aaPredicted RBP13.29□□□□□ -0.28
UPF1-204ENST00000596842 SKA3Q8IX90 412 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 CHST5Q9GZS9 411 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 SLC2A9Q9NRM0 540 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 NECAP2Q9NVZ3 263 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 OCIAD1Q9NX40 245 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 CACFD1Q9UGQ2 172 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 UBE2J1Q9Y385 318 aaPredicted RBP13.29□□□□□ -0.28
UPF1-204ENST00000596842 PTRH2Q9Y3E5 179 aaKnown RBP13.29□□□□□ -0.28
UPF1-204ENST00000596842 KPTNQ9Y664 436 aa13.29□□□□□ -0.28
UPF1-204ENST00000596842 AQP7P3A6NL99 342 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 NUDT19A8MXV4 375 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 C3orf80F5H4A9 247 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 EPHA1P21709 976 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 SPCS3P61009 180 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 TLE1Q04724 770 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 PLCXD3Q63HM9 321 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 SLC25A24Q6NUK1 477 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 OR51B6Q9H340 312 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 C19orf12Q9NSK7 152 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 TCF21O43680 179 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 MSX1P28360 303 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 THBS4P35443 961 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 ENDOGQ14249 297 aaKnown RBP13.28□□□□□ -0.28
UPF1-204ENST00000596842 SHBQ15464 509 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 C17orf78Q8N4C9 275 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 BCO1Q9HAY6 547 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 GOLT1BQ9Y3E0 138 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 ADAMTS9Q9P2N4 1935 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 CCDC187A0A096LP49 1063 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 ZNF727A8MUV8 499 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 DMRTA1Q5VZB9 504 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 ARL6IP6Q8N6S5 226 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 PARP11Q9NR21 331 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 MTCH2Q9Y6C9 303 aa13.28□□□□□ -0.28
UPF1-204ENST00000596842 E5RGE8 158 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 SSSCA1O60232 199 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 CCL2P13500 99 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 GNRHRP30968 328 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 PYY3Q5JQD4 70 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 MRPL41Q8IXM3 137 aaKnown RBP13.27□□□□□ -0.28
UPF1-204ENST00000596842 FBLN5Q9UBX5 448 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 SLC7A11Q9UPY5 501 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 NSG2Q9Y328 171 aa13.27□□□□□ -0.28
UPF1-204ENST00000596842 CRYM-AS1A6NIL9 109 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 CYB5BO43169 146 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 CTSDP07339 412 aaPredicted RBP13.27□□□□□ -0.29
UPF1-204ENST00000596842 H2AFB1P0C5Y9 115 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 OR5T1Q8NG75 326 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 PP6455Q8WZ26 134 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 ZNF576Q9H609 170 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 NAA60Q9H7X0 242 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 MUC3AQ02505 3323 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 ST8SIA3O43173 380 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 HSPA12AO43301 675 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 CD5P06127 495 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 SOHLH1Q5JUK2 328 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 FAM89BQ8N5H3 189 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 OR2G3Q8NGZ4 309 aa13.27□□□□□ -0.29
UPF1-204ENST00000596842 ALDH3B1P43353 468 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 SUMF2Q8NBJ7 301 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 R4GN57 208 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 IGKV1-27A0A075B6S5 117 aa13.26□□□□□ -0.29
UPF1-204ENST00000596842 ZNF32P17041 273 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms