RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 ZNF471Q9BX82 626 aaPredicted RBP16.86■□□□□ 0.29
CLIP3-206ENST00000593074 SDHAF2Q9NX18 166 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 RASL12Q9NYN1 266 aa16.86■□□□□ 0.29
CLIP3-206ENST00000593074 IGHV1-2P23083 117 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 FCGR2CP31995 323 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 TGFBR3Q03167 851 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 RBM39Q14498 530 aaKnown RBP16.85■□□□□ 0.29
CLIP3-206ENST00000593074 IGFL3Q6UXB1 125 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 PDZD9Q8IXQ8 264 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 CCDC36Q8IYA8 594 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 KLK10O43240 276 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF205O95201 554 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 NAPSAO96009 420 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 HOXB5P09067 269 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 UCP3P55916 312 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 GNG3P63215 75 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 MYPOPQ86VE0 399 aaPredicted RBP16.85■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF573Q86YE8 665 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 RRNAD1Q96FB5 475 aaKnown RBP16.85■□□□□ 0.29
CLIP3-206ENST00000593074 GALNT14Q96FL9 552 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 PLSCR2Q9NRY7 297 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 IL36RNQ9UBH0 155 aa16.85■□□□□ 0.29
CLIP3-206ENST00000593074 DOCK7Q96N67 2140 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 SYNGR1O43759 233 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 PET100P0DJ07 73 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 ZNF250P15622 560 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 GLP1RP43220 463 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 FBXW12Q6X9E4 464 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 LINC00596Q86U02 117 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 WNT2BQ93097 391 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 OR51B6Q9H340 312 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 PLK3Q9H4B4 646 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 NAA60Q9H7X0 242 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 PFDN2Q9UHV9 154 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 MEMO1Q9Y316 297 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 LOC400499M0QZD8 3231 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 PROB1E7EW31 1015 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 KCNAB3O43448 404 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 IL24Q13007 206 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 RAB32Q13637 225 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 OR2T2Q6IF00 324 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 HAGHLQ6PII5 290 aaPredicted RBP16.84■□□□□ 0.29
CLIP3-206ENST00000593074 Q6ZT83 130 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 SLC38A6Q8IZM9 456 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 STOML3Q8TAV4 291 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 TAAR6Q96RI8 345 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 COL25A1Q9BXS0 654 aaPredicted RBP16.84■□□□□ 0.29
CLIP3-206ENST00000593074 OR5AC2Q9NZP5 309 aa16.84■□□□□ 0.29
CLIP3-206ENST00000593074 F5H0A9 414 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-206ENST00000593074 CNOT4O95628 575 aaKnown RBP16.83■□□□□ 0.28
CLIP3-206ENST00000593074 FXYD4P59646 89 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 ABCA11PQ4W5N1 156 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 RELL2Q8NC24 303 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-206ENST00000593074 RTN4IP1Q8WWV3 396 aaPredicted RBP16.83■□□□□ 0.28
CLIP3-206ENST00000593074 SLX1AQ9BQ83 275 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 PKIBQ9C010 78 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 SLC2A9Q9NRM0 540 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 URB1O60287 2271 aaKnown RBP16.83■□□□□ 0.28
CLIP3-206ENST00000593074 MUC6Q6W4X9 2439 aa16.83■□□□□ 0.28
CLIP3-206ENST00000593074 AHRRA9YTQ3 701 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 SMPD2O60906 423 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 CELA3BP08861 270 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 UBE2NP61088 152 aaKnown RBP16.82■□□□□ 0.28
CLIP3-206ENST00000593074 CNEP1R1Q8N9A8 125 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 AQP10Q96PS8 301 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 Q9N2K0 584 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 LHX6Q9UPM6 363 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 DMXL1Q9Y485 3027 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 CA6P23280 308 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 MRPL49Q13405 166 aaKnown RBP16.82■□□□□ 0.28
CLIP3-206ENST00000593074 TMEM187Q14656 261 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 SPATA46Q5T0L3 261 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 C9orf106Q8NAJ2 232 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 RSRP1Q9BUV0 290 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 OR51I2Q9H344 312 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 DNAJB11Q9UBS4 358 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 KCNIP3Q9Y2W7 256 aa16.82■□□□□ 0.28
CLIP3-206ENST00000593074 LYZL6O75951 148 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 PRKACAP17612 351 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 AADACP22760 399 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 KIR2DL2P43627 348 aaPredicted RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 GABRA6Q16445 453 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 IAH1Q2TAA2 248 aaPredicted RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 IGSF11Q5DX21 431 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 FAM74A1Q5RGS3 127 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 LRTM2Q8N967 370 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 GTF3AQ92664 365 aaKnown RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 BOD1Q96IK1 185 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 SUCNR1Q9BXA5 334 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 SPACA1Q9HBV2 294 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 TUBD1Q9UJT1 453 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 MSGN1A6NI15 193 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 PPYP01298 95 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 OR5AC1P0C628 307 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 COX5AP20674 150 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 IDH3GP51553 393 aaPredicted RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 HERV-K104P61576 105 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 NAAAQ02083 359 aa16.81■□□□□ 0.28
CLIP3-206ENST00000593074 SNTB1Q13884 538 aaKnown RBP16.81■□□□□ 0.28
CLIP3-206ENST00000593074 IL13RA2Q14627 380 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms