RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 ATAD3CQ5T2N8 411 aa9□□□□□ -0.97
SS18-213ENST00000579640 ATPAF1Q5TC12 328 aaPredicted RBP9□□□□□ -0.97
SS18-213ENST00000579640 STUMQ69YW2 141 aa9□□□□□ -0.97
SS18-213ENST00000579640 SFRP4Q6FHJ7 346 aaPredicted RBP9□□□□□ -0.97
SS18-213ENST00000579640 SIGIRRQ6IA17 410 aa9□□□□□ -0.97
SS18-213ENST00000579640 MUC20Q8N307 709 aaPredicted RBP9□□□□□ -0.97
SS18-213ENST00000579640 MFSD4AQ8N468 514 aa9□□□□□ -0.97
SS18-213ENST00000579640 ANGPTL6Q8NI99 470 aa9□□□□□ -0.97
SS18-213ENST00000579640 PPP1R35Q8TAP8 253 aa9□□□□□ -0.97
SS18-213ENST00000579640 ARHGAP5-AS1Q96IT6 56 aa9□□□□□ -0.97
SS18-213ENST00000579640 PECRQ9BY49 303 aa9□□□□□ -0.97
SS18-213ENST00000579640 BEX4Q9NWD9 120 aaPredicted RBP9□□□□□ -0.97
SS18-213ENST00000579640 ZNF222Q9UK12 451 aa9□□□□□ -0.97
SS18-213ENST00000579640 MRPS7Q9Y2R9 242 aaKnown RBP9□□□□□ -0.97
SS18-213ENST00000579640 UTP20O75691 2785 aaKnown RBP8.99□□□□□ -0.97
SS18-213ENST00000579640 IGHV3OR15-7A0A075B7D8 119 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 NKX6-3A6NJ46 265 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 MCRIP1C9JLW8 97 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 LYNX1G3V0Z9 82 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 MFNGO00587 321 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 CTDSPLO15194 276 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 NDUFS7O75251 213 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 CA11O75493 328 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 LY6HO94772 140 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 MELTFP08582 738 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 LYNX1P0DP58 116 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 DNASE1P24855 282 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 MDH2P40926 338 aaKnown RBP8.99□□□□□ -0.97
SS18-213ENST00000579640 KCNJ3P48549 501 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 PDLIM4P50479 330 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 ATP5J2P56134 94 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 KRTAP10-9P60411 292 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 SCN1BQ07699 218 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 ZNF260Q3ZCT1 412 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 CDNFQ49AH0 187 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 PLAC9Q5JTB6 97 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 NKAPLQ5M9Q1 402 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 SHEQ5VZ18 495 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 HIST2H2BCQ6DN03 193 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 IZUMO1Q8IYV9 350 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 NRGNQ92686 78 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 SEH1LQ96EE3 360 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 SDSLQ96GA7 329 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 ZNF665Q9H7R5 613 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 AUNIPQ9H7T9 357 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 TMEM165Q9HC07 324 aa8.99□□□□□ -0.97
SS18-213ENST00000579640 FLNBO75369 2602 aaKnown RBP8.99□□□□□ -0.97
SS18-213ENST00000579640 ASH1LQ9NR48 2969 aaKnown RBP8.99□□□□□ -0.97
SS18-213ENST00000579640 IGKV1D-17A0A075B6S4 117 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 TRAV24A0A0B4J272 114 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 A0A0G2JMP0 313 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 A0A0X1KG70 313 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SIRPB1O00241 398 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SULT1C2O00338 296 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SLC33A1O00400 549 aaPredicted RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 PPIHO43447 177 aaKnown RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 ZNF205O95201 554 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 IGHV2-70P01814 119 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 HLA-DQB1P01920 261 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 CD40LGP29965 261 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GABRA2P47869 451 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 HOXA4Q00056 320 aaPredicted RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 PDCD1Q15116 288 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 ZMYND11Q15326 602 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 TMEM155Q4W5P6 130 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 PAN3Q58A45 887 aaKnown RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 SLC36A1Q7Z2H8 476 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 C6orf201Q7Z4U5 140 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 ZNF561Q8N587 486 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 CD177Q8N6Q3 437 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GDPD1Q8N9F7 314 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 DTX3Q8N9I9 347 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SUMF2Q8NBJ7 301 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 C19orf18Q8NEA5 215 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 DEFB108BQ8NET1 73 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 OR4M2Q8NGB6 313 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 ST8SIA4Q92187 359 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 NINJ1Q92982 152 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 DPCDQ9BVM2 203 aaPredicted RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 SCPEP1Q9HB40 452 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 USF3Q68DE3 2245 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 NDUFS8O00217 210 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SSX4O60224 188 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GYPAP02724 150 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GNB3P16520 340 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GIFP27352 417 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 PRSS3P35030 304 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 GPR6P46095 362 aaPredicted RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 CEBPDP49716 269 aaPredicted RBP8.98□□□□□ -0.97
SS18-213ENST00000579640 PPP5CP53041 499 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 DSCR9P59020 149 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 COL10A1Q03692 680 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 ZNF79Q15937 498 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 PYDC2Q56P42 97 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 HACD4Q5VWC8 232 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 ZNF788Q6ZQV5 615 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 DCDC5Q6ZRR9 648 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SNX29P2Q8IUI4 249 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 LRRC75A-AS1Q8N1F1 130 aa8.98□□□□□ -0.97
SS18-213ENST00000579640 SPICQ8N5J4 248 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms