RNA–Protein interactions for RNA: ENST00000574087.1

NUP88-208, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-208ENST00000574087 IL36GQ9NZH8 169 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 VPREB3Q9UKI3 123 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 FBXO5Q9UKT4 447 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 FARSAQ9Y285 508 aaKnown RBP2.96□□□□□ -1.94
NUP88-208ENST00000574087 UTP11Q9Y3A2 253 aaKnown RBP2.96□□□□□ -1.94
NUP88-208ENST00000574087 V9GY05 133 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 UGGT2Q9NYU1 1516 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 SMARCA4P51532 1647 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 TRPM1Q7Z4N2 1603 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 EIF2AK4Q9P2K8 1649 aaKnown RBP2.96□□□□□ -1.94
NUP88-208ENST00000574087 YLPM1P49750 1951 aaKnown RBP2.96□□□□□ -1.94
NUP88-208ENST00000574087 KIF1BO60333 1816 aa2.96□□□□□ -1.94
NUP88-208ENST00000574087 PCM1Q15154 2024 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 AKAP12Q02952 1782 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ARHGEF11O15085 1522 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 IGHV1OR21-1A0A087WYE8 117 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 A0A0A6YYD5 115 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ANKRD63C9JTQ0 380 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 K7EN84 100 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 SIRPB1O00241 398 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RAD1O60671 282 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CNIH1O95406 144 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 IGF2P01344 180 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CD74P04233 296 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 IFI30P13284 250 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ZNF25P17030 456 aaPredicted RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 CXCR1P25024 350 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 F2RP25116 425 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 PSMA1P25786 263 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 FOXN2P32314 431 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CD200P41217 278 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 NBL1P41271 181 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 KIR2DS4P43632 304 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 MAP2K4P45985 399 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 GPR1P46091 355 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RPS9P46781 194 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 AKR1D1P51857 326 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 KLF3P57682 345 aaPredicted RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 OR2B8PP59922 312 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RAB2AP61019 212 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RPS15AP62244 130 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 RAP1AP62834 184 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 TGFBR3Q03167 851 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 SKP2Q13309 424 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 UNC119Q13432 240 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 C16orf72Q14CZ0 275 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ZNF77Q15935 545 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 OLIG3Q7RTU3 272 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ZBTB8OSQ8IWT0 167 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 SLC30A8Q8IWU4 369 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 OR2L13Q8N349 312 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ACOT4Q8N9L9 421 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 SLC26A10Q8NG04 563 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 OR6K2Q8NGY2 324 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 GPR151Q8TDV0 419 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 FAM151AQ8WW52 585 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 MAGOHBQ96A72 148 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 SMIM19Q96E16 107 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CENPNQ96H22 339 aaPredicted RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 CAPZA3Q96KX2 299 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 FMO2Q99518 471 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 VAT1Q99536 393 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 PHB2Q99623 299 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CDCA4Q9BXL8 241 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 C20orf85Q9H1P6 137 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 TXNIPQ9H3M7 391 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ISYNA1Q9NPH2 558 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CLN6Q9NWW5 311 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RASL12Q9NYN1 266 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 OR12D3Q9UGF7 316 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 RSL24D1Q9UHA3 163 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 CD84Q9UIB8 345 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 KLK12Q9UKR0 248 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 SNX12Q9UMY4 172 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 ANGPT4Q9Y264 503 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 HSPB11Q9Y547 144 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 CHD2O14647 1828 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 WNK3Q9BYP7 1800 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 IQSEC2Q5JU85 1478 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 MTCL1Q9Y4B5 1905 aaKnown RBP2.95□□□□□ -1.94
NUP88-208ENST00000574087 CEP170Q5SW79 1584 aa2.95□□□□□ -1.94
NUP88-208ENST00000574087 DAPK1P53355 1430 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ABCC3O15438 1527 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 KDM6BO15054 1643 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 RNF17Q9BXT8 1623 aaKnown RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 TRBV6-6A0A0A6YYG2 114 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 A0A0B4J2E0 115 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 A0A1B0GX12 115 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 IGSF23A1L1A6 192 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 FAM166BA8MTA8 275 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 HACD1B0YJ81 288 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 ZNF878C9JN71 531 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 PPP5D1E7EU14 171 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 F5H5T6 163 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 GPR31O00270 319 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 TP53I11O14683 189 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 S1PR2O95136 353 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 KLF8O95600 359 aaPredicted RBP2.94□□□□□ -1.94
NUP88-208ENST00000574087 RAB36O95755 333 aa2.94□□□□□ -1.94
NUP88-208ENST00000574087 CD160O95971 181 aa2.94□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms