RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 OR2AT4A6NND4 320 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 RIIAD1A6NNX1 92 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 LEUTXA8MZ59 168 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 PTGES3LE9PB15 166 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 G3V4G9 280 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 TSPAN4O14817 238 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 GATCO43716 136 aaKnown RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 CHST1O43916 411 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 SRSF10O75494 262 aaKnown RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 SLC22A5O76082 557 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 DHFRP00374 187 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 CST1P01037 141 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 IFNGP01579 166 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 S100A9P06702 114 aaKnown RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 H2BFMP0C1H6 154 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ALOX5APP20292 161 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ZP3P21754 424 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 TGFBR2P37173 567 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 RORCP51449 518 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 GPM6AP51674 278 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 NKX2-5P52952 324 aaPredicted RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 ERVFRD-1P60508 538 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 PSMA6P60900 246 aaKnown RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 VBP1P61758 197 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 SLC35A2P78381 396 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 CDK5Q00535 292 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 IFITM3Q01628 133 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ACSM1Q08AH1 577 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 GINS1Q14691 196 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 LDLRAD2Q5SZI1 272 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 KPRPQ5T749 579 aaPredicted RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 PLBD1Q6P4A8 553 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ZNF367Q7RTV3 350 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 CPOQ8IVL8 374 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 MKXQ8IYA7 352 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ZDHHC23Q8IYP9 409 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 RDH10Q8IZV5 341 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 LINC00518Q8N0U6 118 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 DYNAPQ8N1N2 210 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 OR8H1Q8NGG4 311 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 FAM110DQ8TAY7 271 aaPredicted RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 NDNFQ8TB73 568 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 WIPF2Q8TF74 440 aaPredicted RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 FBLIM1Q8WUP2 373 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 AQP3Q92482 292 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 CFHR4Q92496 578 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 H1FXQ92522 213 aaKnown RBP5.46□□□□□ -1.54
VPS53-213ENST00000572334 SDSLQ96GA7 329 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 RNF170Q96K19 258 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 PDCD10Q9BUL8 212 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 RTL8AQ9BWD3 113 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 OR51V1Q9H2C8 321 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 REEP1Q9H902 201 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 ACOT13Q9NPJ3 140 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 IFT46Q9NQC8 304 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 C19orf12Q9NSK7 152 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 PLCXD1Q9NUJ7 323 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 MED9Q9NWA0 146 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 PFDN2Q9UHV9 154 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 COPS3Q9UNS2 423 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 FOXJ3Q9UPW0 622 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 FAM96BQ9Y3D0 163 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 LRP12Q9Y561 859 aa5.46□□□□□ -1.54
VPS53-213ENST00000572334 DNAH9Q9NYC9 4486 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 A0A0U1RQV5 110 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 FAM90A8PA6NJQ4 464 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ANXA2P2A6NMY6 339 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ZNF732B4DXR9 585 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 H3BUX3 64 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 PSMD9O00233 223 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CTDSP2O14595 271 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 MYL12BO14950 172 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 SYNGR1O43759 233 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 SNAPINO95295 136 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 NDUFB7P17568 137 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 MYL12AP19105 171 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 PRKACGP22612 351 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 GLRA1P23415 457 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 GNALP38405 381 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 KIR2DS4P43632 304 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CEBPDP49716 269 aaPredicted RBP5.45□□□□□ -1.54
VPS53-213ENST00000572334 DLX6P56179 175 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ISL1P61371 349 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 HERPUD1Q15011 391 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 LY6EQ16553 131 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 BAK1Q16611 211 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CEACAM21Q3KPI0 293 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 SAMD5Q5TGI4 173 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 TMEM236Q5W0B7 351 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 TRIQKQ629K1 86 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 NCR3LG1Q68D85 454 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ELP2Q6IA86 826 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ACP7Q6ZNF0 438 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 Q6ZSR3 168 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CCDC190Q86UF4 302 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CMTM4Q8IZR5 234 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 CD177Q8N6Q3 437 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 ZNF454Q8N9F8 522 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 OR5R1Q8NH85 324 aa5.45□□□□□ -1.54
VPS53-213ENST00000572334 TEX47Q8TBZ9 253 aa5.45□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms