RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 OSR2Q8N2R0 312 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 OR4M2Q8NGB6 313 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 CHCHD6Q9BRQ6 235 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 PLGRKTQ9HBL7 147 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 SLC25A10Q9UBX3 287 aaPredicted RBP17.08■□□□□ 0.32
VPS53-210ENST00000571456 OR14J1Q9UGF5 321 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 MAB21L2Q9Y586 359 aa17.08■□□□□ 0.32
VPS53-210ENST00000571456 TRBV23-1A0A0A0MS06 115 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A10PA6NDY2 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A18PA6NE21 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A16PA6NEW6 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A20PA6NIJ5 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A8PA6NJQ4 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A7PA6NKC0 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A22PA8MWA6 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A12PA8MX19 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A5PA8MXJ8 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A23PA8MXZ1 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 ENSAO43768 121 aaKnown RBP17.07■□□□□ 0.32
VPS53-210ENST00000571456 AIREO43918 545 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 CDRT1O95170 752 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 HTR3BO95264 441 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A15PP0C7V4 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A13PP0C7W8 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A14PP0C7W9 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM90A24PP0C7X0 464 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 ZNF16P17020 682 aaPredicted RBP17.07■□□□□ 0.32
VPS53-210ENST00000571456 GADD45AP24522 165 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 LMO1P25800 156 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 MPV17LQ2QL34 196 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 C12orf54Q6X4T0 127 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 CD177Q8N6Q3 437 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 FAM216BQ8N7L0 139 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 OR4D6Q8NGJ1 314 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 RAB40AQ8WXH6 277 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 SNX22Q96L94 193 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 OR51E2Q9H255 320 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 IFT22Q9H7X7 185 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 HIF1ANQ9NWT6 349 aa17.07■□□□□ 0.32
VPS53-210ENST00000571456 AK6Q9Y3D8 172 aaKnown RBP17.07■□□□□ 0.32
VPS53-210ENST00000571456 LOC105371242A0A075B767 164 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 K7N7A8 449 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 SEC61A1P61619 476 aaKnown RBP17.06■□□□□ 0.32
VPS53-210ENST00000571456 LCN2P80188 198 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 FAM189A2Q15884 450 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 SLC22A6Q4U2R8 563 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 DCAF12L2Q5VW00 463 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 OR2W3Q7Z3T1 314 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 KCNG3Q8TAE7 436 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 SPACA1Q9HBV2 294 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 SCOCQ9UIL1 159 aa17.06■□□□□ 0.32
VPS53-210ENST00000571456 LOC100506127A0A0U1RQW1 187 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 KIR2DS1A0A191URI9 304 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 FUOMA2VDF0 154 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 TK1P04183 234 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 SERPINA2P20848 420 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 ZFP36P26651 326 aaKnown RBP17.05■□□□□ 0.32
VPS53-210ENST00000571456 ALDH3B2P48448 385 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 KCNJ3P48549 501 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 RBM11P57052 281 aaKnown RBP17.05■□□□□ 0.32
VPS53-210ENST00000571456 COL10A1Q03692 680 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 IKZF1Q13422 519 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 RAB11BQ15907 218 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 GPR141Q7Z602 305 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 CROCCP3Q8IVE0 287 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 OR8H2Q8N162 312 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 TMEM185AQ8NFB2 350 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 C8orf46Q8TAG6 207 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 ST8SIA4Q92187 359 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 C1orf147Q96MC9 270 aaPredicted RBP17.05■□□□□ 0.32
VPS53-210ENST00000571456 FBLN5Q9UBX5 448 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 ST3GAL6Q9Y274 331 aa17.05■□□□□ 0.32
VPS53-210ENST00000571456 IGHV2-70DA0A0C4DH43 119 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 A0A1W2PPH5 198 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 NOTOA8MTQ0 251 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 ZNF737O75373 536 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 TFAP2AP05549 437 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 CSN2P05814 226 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 PPIAL4GP0DN37 164 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 ARSBP15848 533 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 RPL5P46777 297 aaKnown RBP17.04■□□□□ 0.32
VPS53-210ENST00000571456 PAX2Q02962 417 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 BATF2Q8N1L9 274 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 ASCC1Q8N9N2 400 aaKnown RBP17.04■□□□□ 0.32
VPS53-210ENST00000571456 ZNRF1Q8ND25 227 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 DACT3Q96B18 629 aaPredicted RBP17.04■□□□□ 0.32
VPS53-210ENST00000571456 DCTN5Q9BTE1 182 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 MRI1Q9BV20 369 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 FUNDC2Q9BWH2 189 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 STEAP1Q9UHE8 339 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 INSIG2Q9Y5U4 225 aa17.04■□□□□ 0.32
VPS53-210ENST00000571456 IFITM5A6NNB3 132 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 AIPO00170 330 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 MGST3O14880 152 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 DEGS1O15121 323 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 OR2H2O95918 312 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 ZNF44P15621 663 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 MGMTP16455 207 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 NDUFB7P17568 137 aa17.03■□□□□ 0.32
VPS53-210ENST00000571456 HNF1AP20823 631 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 43.7 ms