RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 HTR1DP28221 377 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 DUSP1P28562 367 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 ERP29P30040 261 aaKnown RBP11.95□□□□□ -0.5
CLN3-236ENST00000568558 KIR3DL2P43630 455 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 OR3A1P47881 315 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 POU3F4P49335 361 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 ATP1B3P54709 279 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 P2RX3P56373 397 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 ISL1P61371 349 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 IL18R1Q13478 541 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 ZSCAN26Q16670 478 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 C16orf82Q7Z2V1 217 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 FAM58AQ8N1B3 248 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 WFDC9Q8NEX5 89 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 OR5AU1Q8NGC0 362 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 OR8J1Q8NGP2 316 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 EME1Q96AY2 570 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 HRASLS5Q96KN8 279 aa11.95□□□□□ -0.5
CLN3-236ENST00000568558 UBE2J1Q9Y385 318 aaPredicted RBP11.95□□□□□ -0.5
CLN3-236ENST00000568558 IGKV1-9A0A0C4DH69 117 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 A0A1W2PRX2 142 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 H3BUI4 141 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 CYB5AP00167 134 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 IGLL1P15814 213 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 SNU13P55769 128 aaKnown RBP11.94□□□□□ -0.5
CLN3-236ENST00000568558 ZNF85Q03923 595 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 SPIN3Q5JUX0 258 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 BAIAP2L2Q6UXY1 529 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 FAM220AQ7Z4H9 259 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 TRAPPC6BQ86SZ2 158 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 RDH10Q8IZV5 341 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 STMN2Q93045 179 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 RNF166Q96A37 237 aaPredicted RBP11.94□□□□□ -0.5
CLN3-236ENST00000568558 ADAT3Q96EY9 351 aaPredicted RBP11.94□□□□□ -0.5
CLN3-236ENST00000568558 LIN7BQ9HAP6 207 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 DPM3Q9P2X0 92 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 ORC6Q9Y5N6 252 aa11.94□□□□□ -0.5
CLN3-236ENST00000568558 SIRPB1O00241 398 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 IGLV1-47P01700 117 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 CALCBP10092 127 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 PF4V1P10720 104 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 ATF1P18846 271 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 CD24P25063 80 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 MTCP1P56278 107 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 CDC42P60953 191 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 BDH1Q02338 343 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 GABPB1Q06547 395 aaPredicted RBP11.93□□□□□ -0.5
CLN3-236ENST00000568558 TMED1Q13445 227 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 RCN1Q15293 331 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 TP53I3Q53FA7 332 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 TCTEX1D4Q5JR98 221 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 PRAMEF5Q5TYX0 476 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 OR52W1Q6IF63 320 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 UTS2BQ765I0 119 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 RTN4RL2Q86UN3 420 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 ABHD12Q8N2K0 398 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 AKR1E2Q96JD6 320 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 GAL3ST2Q9H3Q3 398 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 HMG20AQ9NP66 347 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 IMPAD1Q9NX62 359 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 GLS2Q9UI32 602 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 GNG8Q9UK08 70 aa11.93□□□□□ -0.5
CLN3-236ENST00000568558 TRGV10A0A0A0MS01 117 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 PRKACBP22694 351 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 CDK2P24941 298 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 BRS3P32247 399 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 ATP6V1E1P36543 226 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 PDZK1IP1Q13113 114 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 TMEM244Q5VVB8 128 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 LPCAT4Q643R3 524 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 HEPN1Q6WQI6 88 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 LHFPL2Q6ZUX7 228 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 CENPVQ7Z7K6 275 aaPredicted RBP11.92□□□□□ -0.5
CLN3-236ENST00000568558 OR2G2Q8NGZ5 317 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 ZNF596Q8TC21 504 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 SPSB1Q96BD6 273 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 FGGYQ96C11 551 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 OPALINQ96PE5 141 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 SLC25A33Q9BSK2 321 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 EXOSC4Q9NPD3 245 aaKnown RBP11.92□□□□□ -0.5
CLN3-236ENST00000568558 GSTK1Q9Y2Q3 226 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 KMT2CQ8NEZ4 4911 aaKnown RBP11.92□□□□□ -0.5
CLN3-236ENST00000568558 COL7A1Q02388 2944 aa11.92□□□□□ -0.5
CLN3-236ENST00000568558 IGKV1-12A0A0C4DH73 117 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 FAM172BPA6NC97 362 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 LEUTXA8MZ59 168 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 OR2F2O95006 317 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 OR2H2O95918 312 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 IGKV1D-12P01611 117 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 LPLP06858 475 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 ZNF20P17024 532 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 GABRB1P18505 474 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 LMO1P25800 156 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 CD34P28906 385 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 GDNFP39905 211 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 ARHGDIBP52566 201 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 SNRPGP62308 76 aaKnown RBP11.91□□□□□ -0.5
CLN3-236ENST00000568558 AESQ08117 197 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 LRRC36Q1X8D7 754 aa11.91□□□□□ -0.5
CLN3-236ENST00000568558 ABCA11PQ4W5N1 156 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms