RNA–Protein interactions for RNA: ENST00000566354.1

VPS4A-204, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 1 (best)

Gene VPS4A, Length 2,329 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-204ENST00000566354 CLDN17P56750 224 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 Q6ZSR3 168 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 C6orf201Q7Z4U5 140 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 PFDN5Q99471 154 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 FAM212BQ9NTI7 297 aaPredicted RBP11.52□□□□□ -0.57
VPS4A-204ENST00000566354 CACFD1Q9UGQ2 172 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 MCTS1Q9ULC4 181 aaKnown RBP11.52□□□□□ -0.57
VPS4A-204ENST00000566354 AMDHD2Q9Y303 409 aa11.52□□□□□ -0.57
VPS4A-204ENST00000566354 FRYQ5TBA9 3013 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 IGKV1D-8A0A087WSZ0 117 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 A0A1B0GV90 55 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 DHRS7CA6NNS2 312 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 FAHP16930 419 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 CD82P27701 267 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 SRSF6Q13247 344 aaKnown RBP11.51□□□□□ -0.57
VPS4A-204ENST00000566354 OR2B11Q5JQS5 317 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 GGNBP1Q5YKI7 109 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 REC114Q7Z4M0 266 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 ZFP82Q8N141 532 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 COMMD1Q8N668 190 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 SLC24A4Q8NFF2 622 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 NELFAQ9H3P2 528 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 ANXA10Q9UJ72 324 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 PIGLQ9Y2B2 252 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 TP53TG5Q9Y2B4 290 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 KCNIP3Q9Y2W7 256 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 STARD10Q9Y365 291 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 OR8U9P0C7N5 309 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 EDN3P14138 238 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 C10orf128Q5T292 105 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 RPUSD3Q6P087 351 aaKnown RBP11.51□□□□□ -0.57
VPS4A-204ENST00000566354 VASH2Q86V25 355 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 OR8U1Q8NH10 309 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 AKR1E2Q96JD6 320 aa11.51□□□□□ -0.57
VPS4A-204ENST00000566354 LAMA5O15230 3695 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 PIEZO1Q92508 2521 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 HSBP1L1C9JCN9 74 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 E5RGE8 158 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 TSPAN15O95858 294 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 MBP02144 154 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 OR5H8P0DN80 308 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 LIFP15018 202 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 GABRR1P24046 479 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 CSNK1A1P48729 337 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 CD81P60033 236 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 ATP1A1-AS1Q5TC04 95 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 SLC39A7Q92504 469 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 MRPL24Q96A35 216 aaKnown RBP11.5□□□□□ -0.57
VPS4A-204ENST00000566354 Q96M66 194 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 PIGQQ9BRB3 760 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 ARV1Q9H2C2 271 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 NSG2Q9Y328 171 aa11.5□□□□□ -0.57
VPS4A-204ENST00000566354 LSM5Q9Y4Y9 91 aaKnown RBP11.5□□□□□ -0.57
VPS4A-204ENST00000566354 MARCH11A6NNE9 402 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 TCAPO15273 167 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 SEC11BP0C7V7 166 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 OTX1P32242 354 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 ID4P47928 161 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 ENDOGQ14249 297 aaKnown RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 HABP2Q14520 560 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 IGF2-ASQ6U949 168 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 RPS19BP1Q86WX3 136 aaKnown RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 FADS6Q8N9I5 356 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 SECTM1Q8WVN6 248 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 PIGTQ969N2 578 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 SPACA9Q96E40 222 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 C14orf79Q96F83 325 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 SMIM3Q9BZL3 60 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 OR5H15A6NDH6 313 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 C1orf196B1AJZ1 125 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 KLK2P20151 261 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 UCP2P55851 309 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 HIST1H3AP68431 136 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 RPP30P78346 268 aaKnown RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 H3F3AP84243 136 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 RSPO1Q2MKA7 263 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 HIST2H3PS2Q5TEC6 136 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 PLXDC2Q6UX71 529 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 FOXL2NBQ6ZUU3 175 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 HIST2H3AQ71DI3 136 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 DPPA2Q7Z7J5 298 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 CLCC1Q96S66 551 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 HSF4Q9ULV5 492 aa11.49□□□□□ -0.57
VPS4A-204ENST00000566354 NCOA6Q14686 2063 aaPredicted RBP11.49□□□□□ -0.57
VPS4A-204ENST00000566354 BORCS7-ASMTA0A0B4J1R7 106 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 DANCRP0C864 163 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 TMEM225BP0DP42 221 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SPINK2P20155 84 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SNCAP37840 140 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 PPT1P50897 306 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 PIGPP57054 158 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 RTP5Q14D33 572 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 GPR157Q5UAW9 335 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 TMEM54Q969K7 222 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 GALNT14Q96FL9 552 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 TUBA4BQ9H853 241 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 RPS10P5Q9NQ39 176 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 NECAP2Q9NVZ3 263 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 M0R135 149 aa11.48□□□□□ -0.57
VPS4A-204ENST00000566354 SCGB1D2O95969 90 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms