RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 TMPRSS13Q9BYE2 586 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 IL36RNQ9UBH0 155 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 MRPS28Q9Y2Q9 187 aaKnown RBP14.27□□□□□ -0.13
CLN3-217ENST00000565354 MAB21L2Q9Y586 359 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 AUP1Q9Y679 476 aa14.27□□□□□ -0.13
CLN3-217ENST00000565354 KIR2DS1A0A191URI9 304 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 A0A1W2PQ09 198 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 ZNF780AO75290 641 aaPredicted RBP14.26□□□□□ -0.13
CLN3-217ENST00000565354 LIPFP07098 398 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 ZNF44P15621 663 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 SERPINA2P20848 420 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 GABRR1P24046 479 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 CALRP27797 417 aaKnown RBP14.26□□□□□ -0.13
CLN3-217ENST00000565354 CAV3P56539 151 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 FGF12P61328 243 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 SCN1BQ07699 218 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 GPR176Q14439 515 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 C1QL2Q7Z5L3 287 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 PPP1R35Q8TAP8 253 aa14.26□□□□□ -0.13
CLN3-217ENST00000565354 FOXRED1Q96CU9 486 aaPredicted RBP14.26□□□□□ -0.13
CLN3-217ENST00000565354 RPUSD1Q9UJJ7 312 aaKnown RBP14.26□□□□□ -0.13
CLN3-217ENST00000565354 SIRPB1O00241 398 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 PPIAL4GP0DN37 164 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 MYL9P24844 172 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 ZNF146Q15072 292 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 SLC22A6Q4U2R8 563 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 GLIPR1L1Q6UWM5 242 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 GDPD3Q7L5L3 318 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 SNX22Q96L94 193 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 UQCC2Q9BRT2 126 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 DCTN5Q9BTE1 182 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 FAM234AQ9H0X4 552 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 ZNF696Q9H7X3 374 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 CNTD2Q9H8S5 307 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 ONECUT1Q9UBC0 465 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 WNK2Q9Y3S1 2297 aa14.25□□□□□ -0.13
CLN3-217ENST00000565354 FCN3O75636 299 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 TK1P04183 234 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 EDDM3BP56851 147 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 PAX2Q02962 417 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 SYT6Q5T7P8 510 aaPredicted RBP14.24□□□□□ -0.13
CLN3-217ENST00000565354 METTL11BQ5VVY1 283 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 ELP2Q6IA86 826 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 USP43Q70EL4 1123 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 LRRTM1Q86UE6 522 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 CMTM4Q8IZR5 234 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 FAM185AQ8N0U4 392 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 OSR2Q8N2R0 312 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 OR5D13Q8NGL4 314 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 NANPQ8TBE9 248 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 PPIL3Q9H2H8 161 aaKnown RBP14.24□□□□□ -0.13
CLN3-217ENST00000565354 IL36GQ9NZH8 169 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 STUB1Q9UNE7 303 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 SSR3Q9UNL2 185 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 DOCK11Q5JSL3 2073 aa14.24□□□□□ -0.13
CLN3-217ENST00000565354 ARHGAP32A7KAX9 2087 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 TRBV23-1A0A0A0MS06 115 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 TRDV1A0A1B0GX56 115 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 TRIM77I1YAP6 450 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 K7N7A8 449 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 PDCD5O14737 125 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 DEGS1O15121 323 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 OR2H2O95918 312 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 ADRA2CP18825 462 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 GP2P55259 537 aaKnown RBP14.23□□□□□ -0.13
CLN3-217ENST00000565354 HILS1P60008 231 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 PAX8Q06710 450 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 EDDM3AQ14507 147 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 IL13RA2Q14627 380 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 GRK1Q15835 563 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 PDLIM3Q53GG5 364 aaPredicted RBP14.23□□□□□ -0.13
CLN3-217ENST00000565354 PRR31Q5SQ13 230 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 ASCL4Q6XD76 172 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 OR4M1Q8NGD0 313 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 PCGF1Q9BSM1 259 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 CHST6Q9GZX3 395 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 SEBOXQ9HB31 216 aaPredicted RBP14.23□□□□□ -0.13
CLN3-217ENST00000565354 PLGRKTQ9HBL7 147 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 ST3GAL6Q9Y274 331 aa14.23□□□□□ -0.13
CLN3-217ENST00000565354 AK6Q9Y3D8 172 aaKnown RBP14.23□□□□□ -0.13
CLN3-217ENST00000565354 A0A1W2PPH5 198 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 TOX4O94842 621 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 AVPP01185 164 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 GTF2F2P13984 249 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 GALP22466 123 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 RANBP1P43487 201 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 PSMD7P51665 324 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 ARF6P62330 175 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 RPL31P62899 125 aaKnown RBP14.22□□□□□ -0.13
CLN3-217ENST00000565354 BLMHQ13867 455 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 C22orf42Q6IC83 251 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 OR8H2Q8N162 312 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 CHST4Q8NCG5 386 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 OR4D6Q8NGJ1 314 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 TBC1D15Q8TC07 691 aa14.22□□□□□ -0.13
CLN3-217ENST00000565354 TMEM82A0PJX8 343 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 ZNF737O75373 536 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 CRTAPO75718 401 aaPredicted RBP14.21□□□□□ -0.13
CLN3-217ENST00000565354 UBBP0CG47 229 aa14.21□□□□□ -0.13
CLN3-217ENST00000565354 CD36P16671 472 aa14.21□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms