RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 NEK6Q9HC98 313 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 DIMT1Q9UNQ2 313 aaKnown RBP14.93□□□□□ -0.02
CLN3-214ENST00000565140 MEGF8Q7Z7M0 2845 aa14.93□□□□□ -0.02
CLN3-214ENST00000565140 BTBD17A6NE02 478 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 H3BUX3 64 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 SH2D1BO14796 132 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 OR2H2O95918 312 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 LALBAP00709 142 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 IGHV1-8P0DP01 117 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 TMEM225BP0DP42 221 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 KRTAP10-3P60369 221 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 CCDC58Q4VC31 144 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 OGFRL1Q5TC84 451 aaPredicted RBP14.92□□□□□ -0.02
CLN3-214ENST00000565140 LAIR2Q6ISS4 152 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 TMPRSS11AQ6ZMR5 421 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 Q6ZSV7 163 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 LHFPL4Q7Z7J7 247 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 SETD9Q8NE22 299 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 OR5R1Q8NH85 324 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 GGHQ92820 318 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 BABAM2Q9NXR7 383 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 GLS2Q9UI32 602 aa14.92□□□□□ -0.02
CLN3-214ENST00000565140 hADV38S2A0JD32 116 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 IRGMA1A4Y4 181 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 FAM90A8PA6NJQ4 464 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 MGST3O14880 152 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 CASQ2O14958 399 aaPredicted RBP14.91□□□□□ -0.02
CLN3-214ENST00000565140 OGG1O15527 345 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 RBP4P02753 201 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 SCN1BQ07699 218 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 LDLRAD2Q5SZI1 272 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 Q6P435 159 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 DYNAPQ8N1N2 210 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 TMEM80Q96HE8 168 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 ZNF714Q96N38 554 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 NKX3-1Q99801 234 aaPredicted RBP14.91□□□□□ -0.02
CLN3-214ENST00000565140 ZNF696Q9H7X3 374 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 EXOSC4Q9NPD3 245 aaKnown RBP14.91□□□□□ -0.02
CLN3-214ENST00000565140 TAS2R4Q9NYW5 299 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 EXOSC1Q9Y3B2 195 aaKnown RBP14.91□□□□□ -0.02
CLN3-214ENST00000565140 RNF114Q9Y508 228 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 LINC00312Q9Y6C7 94 aa14.91□□□□□ -0.02
CLN3-214ENST00000565140 A0A0G2JK05 382 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 ODF3BA8MYP8 253 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 MYL12AP19105 171 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 RAB3AP20336 220 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 LMO1P25800 156 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 ERP29P30040 261 aaKnown RBP14.9□□□□□ -0.02
CLN3-214ENST00000565140 CAPGP40121 348 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 LGALS4P56470 323 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 ST3GAL4Q11206 333 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 LY6EQ16553 131 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 LRRC75BQ2VPJ9 315 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 PRR31Q5SQ13 230 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 DHRS7BQ6IAN0 325 aaPredicted RBP14.9□□□□□ -0.02
CLN3-214ENST00000565140 SATL1Q86VE3 508 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 ZNF485Q8NCK3 441 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 OR13C5Q8NGS8 318 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 PIFOQ8TCI5 191 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 GPR148Q8TDV2 347 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 PPA2Q9H2U2 334 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 RHOFQ9HBH0 211 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 HSPE1-MOB4S4R3N1 261 aa14.9□□□□□ -0.02
CLN3-214ENST00000565140 XPNPEP2O43895 674 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 MMP23AO75900 390 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 ARG1P05089 322 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 TGFBR2P37173 567 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 P2RX3P56373 397 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 PROK1P58294 105 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 AESQ08117 197 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 AANATQ16613 207 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 ZNF626Q68DY1 528 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 ZFP41Q8N8Y5 198 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 OR11H6Q8NGC7 330 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 OR13D1Q8NGV5 346 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 PPP1R35Q8TAP8 253 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 TMEM106AQ96A25 262 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 ORAI1Q96D31 301 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 CITED1Q99966 193 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 C16orf95Q9H693 158 aa14.89□□□□□ -0.03
CLN3-214ENST00000565140 NKX1-2Q9UD57 310 aaPredicted RBP14.89□□□□□ -0.03
CLN3-214ENST00000565140 MEGF11A6BM72 1044 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 SLC33A1O00400 549 aaPredicted RBP14.88□□□□□ -0.03
CLN3-214ENST00000565140 GABRPO00591 440 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 TSPAN9O75954 239 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 ZNF44P15621 663 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 GLIPR1P48060 266 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 DMKNQ6E0U4 476 aaPredicted RBP14.88□□□□□ -0.03
CLN3-214ENST00000565140 SLC35E4Q6ICL7 350 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 TRAPPC6BQ86SZ2 158 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 C8orf59Q8N0T1 100 aaPredicted RBP14.88□□□□□ -0.03
CLN3-214ENST00000565140 OR52N1Q8NH53 320 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 FBLIM1Q8WUP2 373 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 GHSRQ92847 366 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 SMIM19Q96E16 107 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 ZNF281Q9Y2X9 895 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 UBE2J1Q9Y385 318 aaPredicted RBP14.88□□□□□ -0.03
CLN3-214ENST00000565140 PCDHGB5Q9Y5G0 923 aa14.88□□□□□ -0.03
CLN3-214ENST00000565140 DEGS1O15121 323 aa14.87□□□□□ -0.03
CLN3-214ENST00000565140 MAGEB3O15480 346 aa14.87□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms