RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 RRAS2P62070 204 aaPredicted RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 CHRFAM7AQ494W8 412 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 SCGB2B2Q4G0G5 96 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ATAD3CQ5T2N8 411 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 FIP1L1Q6UN15 594 aaKnown RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 SEZ6L2Q6UXD5 910 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 IDO2Q6ZQW0 420 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 C6orf201Q7Z4U5 140 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 FAM58AQ8N1B3 248 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 GVQW1Q8N7I0 195 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 BEST4Q8NFU0 473 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 OR4S1Q8NGB4 309 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 OR5H2Q8NGV7 314 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 FBXW5Q969U6 566 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 MBD6Q96DN6 1003 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 CMSS1Q9BQ75 279 aaKnown RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 FAAP24Q9BTP7 215 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 TINAGL1Q9GZM7 467 aaPredicted RBP7.6□□□□□ -1.19
VPS39-207ENST00000563692 OR51J1Q9H342 316 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 LIME1Q9H400 295 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ZNF442Q9H7R0 627 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 SLC2A8Q9NY64 477 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ETAA1Q9NY74 926 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 MTCH1Q9NZJ7 389 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 GLS2Q9UI32 602 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 DUSP13Q9UII6 198 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ZNF221Q9UK13 617 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 ANAPC10Q9UM13 185 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 OTOGQ6ZRI0 2925 aa7.6□□□□□ -1.19
VPS39-207ENST00000563692 PLSCR5A0PG75 271 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 UBE2QL1A1L167 161 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 C7orf66A4D0T2 115 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 SNRPGP15A8MWD9 76 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 MCRIP1C9JLW8 97 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 M0QYG6 137 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 SSNA1O43805 119 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 LILRA1O75019 489 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 OR7C1O76099 320 aaPredicted RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 PMP2P02689 132 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 RLN1P04808 185 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 GRPP07492 148 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 CD99P14209 185 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 PRKACAP17612 351 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 DTYMKP23919 212 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 CD40P25942 277 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 CHATP28329 748 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 MPV17P39210 176 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 NPBWR2P48146 333 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 MECP2P51608 486 aaKnown RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 SNU13P55769 128 aaKnown RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 RIPPLY3P57055 190 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 TSPAN5P62079 268 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 CBX3Q13185 183 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 RBM39Q14498 530 aaKnown RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 IL13RA2Q14627 380 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 GRK1Q15835 563 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 DEFB113Q30KQ7 82 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 PIGYQ3MUY2 71 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 VAX1Q5SQQ9 334 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 CD276Q5ZPR3 534 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 OR52W1Q6IF63 320 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 FAAP20Q6NZ36 180 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 ARRDC1Q8N5I2 433 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 SCCPDHQ8NBX0 429 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 OR10AD1Q8NGE0 317 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 OR5AP2Q8NGF4 316 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 OR4D10Q8NGI6 311 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 GIMAP1Q8WWP7 306 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 EMG1Q92979 244 aaKnown RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 PIK3IP1Q96FE7 263 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 RADILQ96JH8 1075 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 FGF23Q9GZV9 251 aaPredicted RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 ALX4Q9H161 411 aaPredicted RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 GHITMQ9H3K2 345 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 RIMS4Q9H426 269 aaPredicted RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 PLEKHF2Q9H8W4 249 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 BEX4Q9NWD9 120 aaPredicted RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 TEP1Q99973 2627 aaKnown RBP7.59□□□□□ -1.19
VPS39-207ENST00000563692 PDZD2O15018 2839 aa7.59□□□□□ -1.19
VPS39-207ENST00000563692 TACC2O95359 2948 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 H7C1Q1 480 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 DEGS1O15121 323 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 SYNGR1O43759 233 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 CREBL2O60519 120 aaPredicted RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 IGHV3-13P01766 116 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 CSN2P05814 226 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 ZNF735P0CB33 412 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 ZNF250P15622 560 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 CCKARP32238 428 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 HRH1P35367 487 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 ECI1P42126 302 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 EIF2B2P49770 351 aaKnown RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 KLF3P57682 345 aaPredicted RBP7.58□□□□□ -1.2
VPS39-207ENST00000563692 ARPC4P59998 168 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 IKZF1Q13422 519 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 SRSF7Q16629 238 aaKnown RBP eCLIP7.58□□□□□ -1.2
VPS39-207ENST00000563692 NKPD1Q17RQ9 610 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 ALKBH6Q3KRA9 238 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 BEX5Q5H9J7 111 aa7.58□□□□□ -1.2
VPS39-207ENST00000563692 SIGIRRQ6IA17 410 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms