RNA–Protein interactions for RNA: ENST00000562420.1

VPS35-203, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 740 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-203ENST00000562420 CREBL2O60519 120 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 UPK3AO75631 287 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CD8AP01732 235 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 HBZP02008 142 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MT-ND4P03905 459 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 FABP3P05413 133 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 BCHEP06276 602 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 DBIP07108 87 aaKnown RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 CSN3P07498 182 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MMP7P09237 267 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 MPC1LP0DKB6 136 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TPT1P13693 172 aaKnown RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 NCK1P16333 377 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ZNF19P17023 458 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CXCL2P19875 107 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TPSB2P20231 275 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 GYG1P46976 350 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 LGALS7P47929 136 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 DNASE1L1P49184 302 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ARRB1P49407 418 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 AKR1C2P52895 323 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CRISP1P54107 249 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 NDUFA6P56556 154 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TAS2R19P59542 299 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 SEC61GP60059 68 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CKS1BP61024 79 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 RAB10P61026 200 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MAXP61244 160 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 PAFAH1B2P68402 229 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CYCSP99999 105 aaKnown RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 MLLT11Q13015 90 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 CRMP1Q14194 572 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TMEM132DQ14C87 1099 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MAD2L1BPQ15013 274 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 TPSAB1Q15661 275 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 IAH1Q2TAA2 248 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 HLA-BQ31612 363 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 VWA2Q5GFL6 755 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MARC1Q5VT66 337 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 C22orf42Q6IC83 251 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 FAM159AQ6UWV7 190 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 SLC47A2Q86VL8 602 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 IFNEQ86WN2 208 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MARCH9Q86YJ5 346 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CBLN2Q8IUK8 224 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 C11orf42Q8N5U0 333 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ACOT4Q8N9L9 421 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CYB561A3Q8NBI2 242 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 LFNGQ8NES3 379 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR51A2Q8NGJ7 313 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR5D13Q8NGL4 314 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR5AK2Q8NH90 309 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR5K2Q8NHB8 316 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR2T6Q8NHC8 308 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TNFAIP8L1Q8WVP5 186 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TOMM40LQ969M1 308 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 PTH2Q96A98 100 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 C16orf58Q96GQ5 468 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ZFP3Q96NJ6 502 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 ATOH8Q96SQ7 321 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 FAAP24Q9BTP7 215 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 RSG1Q9BU20 258 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 HINT2Q9BX68 163 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CLEC7AQ9BXN2 247 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 OR51I1Q9H343 314 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 METTL17Q9H7H0 456 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 MED20Q9H944 212 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TAF9BQ9HBM6 251 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 CDH20Q9HBT6 801 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 RBM22Q9NW64 420 aaKnown RBP eCLIP2.85□□□□□ -1.95
VPS35-203ENST00000562420 PIPOXQ9P0Z9 390 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 COMMD3Q9UBI1 195 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 C19orf25Q9UFG5 118 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 JPT1Q9UK76 154 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 TRAPPC2LQ9UL33 140 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 GPR132Q9UNW8 380 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 LRP6O75581 1613 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 COL22A1Q8NFW1 1626 aaPredicted RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 CHD4Q14839 1912 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 MTCL1Q9Y4B5 1905 aaKnown RBP2.85□□□□□ -1.95
VPS35-203ENST00000562420 ADAMTS7Q9UKP4 1686 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 PLIN4Q96Q06 1357 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 PEAK1Q9H792 1746 aa2.85□□□□□ -1.95
VPS35-203ENST00000562420 COL2A1P02458 1487 aaPredicted RBP2.84□□□□□ -1.95
VPS35-203ENST00000562420 AKAP11Q9UKA4 1901 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 LRP5O75197 1615 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 IGLV7-46A0A075B6I9 117 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TRBV24-1A0A075B6N3 115 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TRAV38-1A0A0B4J264 116 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 PPIAL4CA0A0B4J2A2 164 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 KBTBD11-OT1A0A1B0GTJ5 212 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 A0A1B0GW15 77 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 A0A1W2PRF3 423 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 A0A1W2PRM7 423 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 C7orf77A4D0Y5 90 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 TVP23AA6NH52 213 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 SLC22A20A6NK97 555 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 VSTM2BA6NLU5 285 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 YJEFN3A6XGL0 299 aa2.84□□□□□ -1.95
VPS35-203ENST00000562420 F8VVB4 439 aa2.84□□□□□ -1.95
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms