RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 REG1BP48304 166 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 ZNF816Q0VGE8 651 aaPredicted RBP7.97□□□□□ -1.13
VPS39-205ENST00000562258 MSMO1Q15800 293 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 SP6Q3SY56 376 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 HACD4Q5VWC8 232 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 RNLSQ5VYX0 342 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 SHEQ5VZ18 495 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 STEAP3Q658P3 488 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 UBAC2Q8NBM4 344 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 OR8G5Q8NG78 346 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 ZFAND2BQ8WV99 257 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 YIPF6Q96EC8 236 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 PLEKHF2Q9H8W4 249 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 SIRT7Q9NRC8 400 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 OBSL1O75147 1896 aa7.97□□□□□ -1.13
VPS39-205ENST00000562258 TRAV1-2A0A0B4J238 106 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 TMEM272A0A1B0GTI8 110 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 NAP1L6A6NFF2 107 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 ARPC5O15511 151 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 PRDX2P32119 198 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 CA7P43166 264 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 EVX1P49640 407 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 PSG7Q13046 419 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 RBMS2Q15434 407 aaKnown RBP7.96□□□□□ -1.13
VPS39-205ENST00000562258 LINC00114Q6XXX2 140 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 EDARADDQ8WWZ3 215 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 LINC00470Q9BZP3 86 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 KIAA1456Q9P272 454 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 TRANK1O15050 2925 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 FN1P02751 2386 aaKnown RBP7.96□□□□□ -1.13
VPS39-205ENST00000562258 CCSO14618 274 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 TIMP3P35625 211 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 GAS1P54826 345 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 PRB3Q04118 309 aaPredicted RBP7.96□□□□□ -1.13
VPS39-205ENST00000562258 CTF1Q16619 201 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 STUMQ69YW2 141 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 SPNS3Q6ZMD2 512 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 SPICQ8N5J4 248 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 DYNC2LI1Q8TCX1 351 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 PINX1Q96BK5 328 aaKnown RBP7.96□□□□□ -1.13
VPS39-205ENST00000562258 SCMH1Q96GD3 660 aa7.96□□□□□ -1.13
VPS39-205ENST00000562258 FYTTD1Q96QD9 318 aaKnown RBP7.96□□□□□ -1.13
VPS39-205ENST00000562258 GABARAPH6UMI1 98 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 SIX6O95475 246 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 ONECUT2O95948 504 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 IFNA5P01569 189 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 FGF9P31371 208 aaPredicted RBP7.96□□□□□ -1.14
VPS39-205ENST00000562258 RAB2AP61019 212 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 C10orf128Q5T292 105 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 C17orf107Q6ZR85 190 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 ST6GALNAC3Q8NDV1 305 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 TMEM104Q8NE00 496 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 SEH1LQ96EE3 360 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 SEC22CQ9BRL7 303 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 UQCC2Q9BRT2 126 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 SHARPINQ9H0F6 387 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 C11orf54Q9H0W9 315 aaPredicted RBP7.96□□□□□ -1.14
VPS39-205ENST00000562258 ZNF665Q9H7R5 613 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 SLC25A10Q9UBX3 287 aaPredicted RBP7.96□□□□□ -1.14
VPS39-205ENST00000562258 RNF212BA8MTL3 300 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 WNT9BO14905 357 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 KLF4O43474 513 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 WISP2O76076 250 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 CTXN2P0C2S0 81 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 ANXA7P20073 488 aaKnown RBP7.96□□□□□ -1.14
VPS39-205ENST00000562258 MPV17P39210 176 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 FAM3AP98173 230 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 MPPED2Q15777 294 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 TATDN3Q17R31 274 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 ABLIM2Q6H8Q1 611 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 LPCAT3Q6P1A2 487 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 TMEM123Q8N131 208 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 TMEM54Q969K7 222 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 TMEM45BQ96B21 275 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 MED30Q96HR3 178 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 RANBP3Q9H6Z4 567 aaPredicted RBP7.96□□□□□ -1.14
VPS39-205ENST00000562258 TAF9BQ9HBM6 251 aa7.96□□□□□ -1.14
VPS39-205ENST00000562258 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP7.96□□□□□ -1.14
VPS39-205ENST00000562258 IGHV1-69-2A0A0G2JMI3 117 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 TEX46H3BTG2 121 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 SS18L1O75177 396 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 TAS2R31P59538 309 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 Q3ZCU0 254 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ACTBL2Q562R1 376 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 FOXB2Q5VYV0 432 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 H2BFWTQ7Z2G1 175 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 TMEM217Q8N7C4 229 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 ZNRF1Q8ND25 227 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 HDHD3Q9BSH5 251 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 OR51J1Q9H342 316 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 PROK2Q9HC23 129 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 FLVCR2Q9UPI3 526 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 SERPINE3A8MV23 424 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 B9A039 149 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 PET100P0DJ07 73 aa7.95□□□□□ -1.14
VPS39-205ENST00000562258 HIST1H1DP16402 221 aaKnown RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 HOXA1P49639 335 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 RPL11P62913 178 aaKnown RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 ZNF362Q5T0B9 420 aaPredicted RBP7.95□□□□□ -1.14
VPS39-205ENST00000562258 METTL11BQ5VVY1 283 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms