RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 HIF1ANQ9NWT6 349 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 DOCK11Q5JSL3 2073 aa18.03■□□□□ 0.48
SNX1-210ENST00000560260 A0A0B4J203 849 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 TRAV20A0A0B4J274 112 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 ZNF780AO75290 641 aaPredicted RBP18.02■□□□□ 0.48
SNX1-210ENST00000560260 GABARAPO95166 117 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 CSTBP04080 98 aaKnown RBP18.02■□□□□ 0.48
SNX1-210ENST00000560260 MGMTP16455 207 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 NCS1P62166 190 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 MXD1Q05195 221 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 LRRC10Q5BKY1 277 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 GPR107Q5VW38 600 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 BTN2A1Q7KYR7 527 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 GPR141Q7Z602 305 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 ANKRD13BQ86YJ7 626 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 ASCC1Q8N9N2 400 aaKnown RBP18.02■□□□□ 0.48
SNX1-210ENST00000560260 FAM46BQ96A09 425 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 SHARPINQ9H0F6 387 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 GHRLQ9UBU3 117 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 OR5V1Q9UGF6 321 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 ST3GAL6Q9Y274 331 aa18.02■□□□□ 0.48
SNX1-210ENST00000560260 SVEP1Q4LDE5 3571 aa18.02■□□□□ 0.47
SNX1-210ENST00000560260 LOC105371242A0A075B767 164 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 IGHV2-70DA0A0C4DH43 119 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 IFITM5A6NNB3 132 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 TMEM14DPA8MWL7 114 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 K7N7A8 449 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 SLC33A1O00400 549 aaPredicted RBP18.01■□□□□ 0.47
SNX1-210ENST00000560260 GEMIN2O14893 280 aaKnown RBP18.01■□□□□ 0.47
SNX1-210ENST00000560260 CRTAPO75718 401 aaPredicted RBP18.01■□□□□ 0.47
SNX1-210ENST00000560260 BPNT1O95861 308 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 TK1P04183 234 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 UBBP0CG47 229 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 SLC2A2P11168 524 aaPredicted RBP18.01■□□□□ 0.47
SNX1-210ENST00000560260 GTF2F2P13984 249 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 ZNF44P15621 663 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 NDUFB7P17568 137 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 OR3A1P47881 315 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 CAPZA1P52907 286 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 PLA2G7Q13093 441 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 TPRA1Q86W33 373 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 OR4S1Q8NGB4 309 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 OR51D1Q8NGF3 324 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 CHST6Q9GZX3 395 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 YAE1D1Q9NRH1 226 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 STEAP1Q9UHE8 339 aa18.01■□□□□ 0.47
SNX1-210ENST00000560260 TRAV24A0A0B4J272 114 aa18■□□□□ 0.47
SNX1-210ENST00000560260 PPIAL4CA0A0B4J2A2 164 aa18■□□□□ 0.47
SNX1-210ENST00000560260 NOTOA8MTQ0 251 aa18■□□□□ 0.47
SNX1-210ENST00000560260 SH2D1BO14796 132 aa18■□□□□ 0.47
SNX1-210ENST00000560260 LMO1P25800 156 aa18■□□□□ 0.47
SNX1-210ENST00000560260 RPL5P46777 297 aaKnown RBP18■□□□□ 0.47
SNX1-210ENST00000560260 SCN1BQ07699 218 aa18■□□□□ 0.47
SNX1-210ENST00000560260 GPR176Q14439 515 aa18■□□□□ 0.47
SNX1-210ENST00000560260 TAF9Q16594 264 aa18■□□□□ 0.47
SNX1-210ENST00000560260 CTF1Q16619 201 aa18■□□□□ 0.47
SNX1-210ENST00000560260 SNX22Q96L94 193 aa18■□□□□ 0.47
SNX1-210ENST00000560260 Q96M66 194 aa18■□□□□ 0.47
SNX1-210ENST00000560260 DCTN5Q9BTE1 182 aa18■□□□□ 0.47
SNX1-210ENST00000560260 SCOCQ9UIL1 159 aa18■□□□□ 0.47
SNX1-210ENST00000560260 RPUSD1Q9UJJ7 312 aaKnown RBP18■□□□□ 0.47
SNX1-210ENST00000560260 INSIG2Q9Y5U4 225 aa18■□□□□ 0.47
SNX1-210ENST00000560260 AIPO00170 330 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 LDLRAD4O15165 306 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 MPIG6BO95866 241 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 GABRR1P24046 479 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 PSMD7P51665 324 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 VBP1P61758 197 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 SFXN4Q6P4A7 337 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 RAB40AQ8WXH6 277 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 H1FXQ92522 213 aaKnown RBP17.99■□□□□ 0.47
SNX1-210ENST00000560260 FAM3DQ96BQ1 224 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 NUDT16L1Q9BRJ7 211 aaKnown RBP17.99■□□□□ 0.47
SNX1-210ENST00000560260 TMPRSS13Q9BYE2 586 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 SELENOIQ9C0D9 397 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 FAM234AQ9H0X4 552 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 PPA2Q9H2U2 334 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 C19orf12Q9NSK7 152 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 GLS2Q9UI32 602 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 KCNS2Q9ULS6 477 aa17.99■□□□□ 0.47
SNX1-210ENST00000560260 A0A0A6YYD4 124 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 DEGS1O15121 323 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 DCAF12L2Q5VW00 463 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 OR8H2Q8N162 312 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 LY6G5BQ8NDX9 201 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 C8orf46Q8TAG6 207 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 MRPS24Q96EL2 167 aaKnown RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 CST11Q9H112 138 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 IFT22Q9H7X7 185 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 PCDHB16Q9NRJ7 776 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 TMEM272A0A1B0GTI8 110 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 A8MV72 311 aaPredicted RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 HSPB6O14558 160 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 GPR37O15354 613 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 OR7C1O76099 320 aaPredicted RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 AVPP01185 164 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 ARSBP15848 533 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 RPS27AP62979 156 aaKnown RBP17.98■□□□□ 0.47
SNX1-210ENST00000560260 GRK1Q15835 563 aa17.98■□□□□ 0.47
SNX1-210ENST00000560260 MPV17LQ2QL34 196 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms