RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 ACTL6AO96019 429 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 APLNRP35414 380 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 RPS16P62249 146 aaKnown RBP6.29□□□□□ -1.4
USP3-210ENST00000559192 ISXQ2M1V0 245 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 LHFPL2Q6ZUX7 228 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 OR4A16Q8NH70 328 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 ACTR3CQ9C0K3 210 aaPredicted RBP6.29□□□□□ -1.4
USP3-210ENST00000559192 OR51M1Q9H341 326 aa6.29□□□□□ -1.4
USP3-210ENST00000559192 RNF222A6NCQ9 220 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 HKR1P10072 659 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 TCN2P20062 427 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 CD200P41217 278 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 GPR3P46089 330 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PSMB2P49721 201 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 INSM1Q01101 510 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 FOXO1Q12778 655 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 LYZL2Q7Z4W2 148 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR2M7Q8NG81 312 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR10J5Q8NHC4 309 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 AQP3Q92482 292 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 TM4SF19Q96DZ7 209 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 GAGE10A6NGK3 116 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 TNFSF14O43557 240 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR2J3O76001 311 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 SPINK2P20155 84 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 MDKP21741 143 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 THBS4P35443 961 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 CASP6P55212 293 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 FOXL2P58012 376 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 DCDP81605 110 aaKnown RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 TTC32Q5I0X7 151 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 HOGA1Q86XE5 327 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OSR2Q8N2R0 312 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR1N1Q8NGS0 311 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PTPMT1Q8WUK0 201 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 OIT3Q8WWZ8 545 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 FAM234AQ9H0X4 552 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 LPAR5Q9H1C0 372 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 SLC26A1Q9H2B4 701 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 RAB9BQ9NP90 201 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 HEYLQ9NQ87 328 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 H3BQ15 152 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 CD8AP01732 235 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR8U8P0C7N1 319 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 DDTP30046 118 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 DYNLT3P51808 116 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PCBD1P61457 104 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 POLR2GP62487 172 aaKnown RBP eCLIP6.28□□□□□ -1.4
USP3-210ENST00000559192 MGAT2Q10469 447 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 FZD2Q14332 565 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ZNF385CQ66K41 422 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 TMEM251Q8N6I4 163 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PPP1R35Q8TAP8 253 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PHOSPHO2Q8TCD6 241 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 MBD3L1Q8WWY6 194 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 HIST1H2BAQ96A08 127 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PSENENQ9NZ42 101 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ZNF107Q9UII5 783 aaPredicted RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 AUP1Q9Y679 476 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 C3orf85A0A1B0GTC6 90 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 GEMIN2O14893 280 aaKnown RBP6.28□□□□□ -1.4
USP3-210ENST00000559192 CT45A10P0DMU9 189 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 B4GALT1P15291 398 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ERVS71-1P61550 626 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ELOBQ15370 118 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 OR8G1Q15617 311 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ZNF718Q3SXZ3 478 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ZNF813Q6ZN06 617 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 FBXL14Q8N1E6 418 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 RARRES2Q99969 163 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 ATG101Q9BSB4 218 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 GSN-AS1Q9NRJ2 163 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 PILRAQ9UKJ1 303 aa6.28□□□□□ -1.4
USP3-210ENST00000559192 UBE2L5PA0A1B0GUS4 154 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 MSGN1A6NI15 193 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 ALG1L2C9J202 215 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 IRF2P14316 349 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 BMP5P22003 454 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 CD82P27701 267 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 FHITP49789 147 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 GPM6AP51674 278 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 ERVFC1-1P60608 527 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 SHBQ15464 509 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 TMEM240Q5SV17 173 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 RSPO3Q9BXY4 272 aaPredicted RBP6.27□□□□□ -1.41
USP3-210ENST00000559192 SH3BGRL3Q9H299 93 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 CXorf65A6NEN9 183 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 K7EQS6 105 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 DEDDO75618 318 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 KLK2P20151 261 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 LY6G6FQ5SQ64 297 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 STPG1Q5TH74 334 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 NSUN5P2Q63ZY6 315 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 SLC25A26Q70HW3 274 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 M1APQ8TC57 530 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 RDH5Q92781 318 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 CDCA3Q99618 268 aaPredicted RBP6.27□□□□□ -1.41
USP3-210ENST00000559192 MENTQ9BUN1 341 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 SARGQ9BW04 601 aa6.27□□□□□ -1.41
USP3-210ENST00000559192 HSF4Q9ULV5 492 aa6.27□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms