RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 MS4A3Q96HJ5 214 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 PFDN5Q99471 154 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 RHOFQ9HBH0 211 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 FBXL17Q9UF56 701 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 FAM24AA6NFZ4 105 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 PRR32B1ATL7 298 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 CDIPTO14735 213 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 NKX2-8O15522 239 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 SP9P0CG40 484 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 PPP1CBP62140 327 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 ATP1A1-AS1Q5TC04 95 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 SLC25A47Q6Q0C1 308 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 NPAS1Q99742 590 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 SOX7Q9BT81 388 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 LIN7CQ9NUP9 197 aaKnown RBP14.24□□□□□ -0.13
CUX1-213ENST00000549414 TINAGQ9UJW2 476 aa14.24□□□□□ -0.13
CUX1-213ENST00000549414 B4E171 279 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 BCL3P20749 454 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 TSPAN7P41732 249 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 CDCP2Q5VXM1 449 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 RXFP4Q8TDU9 374 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 ASB13Q8WXK3 278 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 TTTY12Q9BZ98 90 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 SMCO4Q9NRQ5 59 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 PSENENQ9NZ42 101 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 IL17BQ9UHF5 180 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 AGFG2O95081 481 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 CEACAM6P40199 344 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 RPS11P62280 158 aaKnown RBP eCLIP14.23□□□□□ -0.13
CUX1-213ENST00000549414 ZNF92Q03936 586 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 LINC00114Q6XXX2 140 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 MRPL24Q96A35 216 aaKnown RBP14.23□□□□□ -0.13
CUX1-213ENST00000549414 CHRNB4P30926 498 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 SMIM21Q3B7S5 101 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 AVPI1Q5T686 147 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 SLC35G3Q8N808 338 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 PRR7Q8TB68 274 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 ARV1Q9H2C2 271 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 G6PC2Q9NQR9 355 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 LRP5LA4QPB2 252 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 FSTP19883 344 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 POLR2GP62487 172 aaKnown RBP eCLIP14.23□□□□□ -0.13
CUX1-213ENST00000549414 SKA3Q8IX90 412 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 TMEM251Q8N6I4 163 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 FAM206AQ9NX38 181 aa14.23□□□□□ -0.13
CUX1-213ENST00000549414 A0A0B4J293 547 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 LEUTXA8MZ59 168 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 C21orf140B9A014 251 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 SCAF4O95104 1147 aaKnown RBP14.22□□□□□ -0.13
CUX1-213ENST00000549414 RPS23P62266 143 aaKnown RBP14.22□□□□□ -0.13
CUX1-213ENST00000549414 TAGLNQ01995 201 aaKnown RBP14.22□□□□□ -0.13
CUX1-213ENST00000549414 TLE1Q04724 770 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 C9orf152Q5JTZ5 239 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 PRSS54Q6PEW0 395 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 RBMS3Q6XE24 437 aaKnown RBP14.22□□□□□ -0.13
CUX1-213ENST00000549414 WDSUB1Q8N9V3 476 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 OPA3Q9H6K4 179 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 RPH3ALQ9UNE2 315 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 USF3Q68DE3 2245 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 C3orf85A0A1B0GTC6 90 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 C3orf80F5H4A9 247 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 CXCL2P19875 107 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 SNAI3Q3KNW1 292 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 AKR1E2Q96JD6 320 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 FN3KRPQ9HA64 309 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 CLEC18AA5D8T8 446 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 GAS1P54826 345 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 S100A12P80511 92 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 FAM181AQ8N9Y4 354 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 CLEC18CQ8NCF0 446 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 VOPP1Q96AW1 172 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 MALSU1Q96EH3 234 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 GPR27Q9NS67 375 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 KPTNQ9Y664 436 aa14.22□□□□□ -0.13
CUX1-213ENST00000549414 NKX6-3A6NJ46 265 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 LHX4Q969G2 390 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 ERGIC1Q969X5 290 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 LNP1A1A4G5 178 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 CFDP00746 253 aaPredicted RBP14.21□□□□□ -0.13
CUX1-213ENST00000549414 SP1P08047 785 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 OR8U8P0C7N1 319 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 TMEM33P57088 247 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 ZNF260Q3ZCT1 412 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 BPIFCQ8NFQ6 507 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 SRXN1Q9BYN0 137 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 STARD10Q9Y365 291 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 C17orf112F2Z3M2 114 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 RFPL3SP0C7P2 107 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 OR3A1P47881 315 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 TMEM267Q0VDI3 215 aaPredicted RBP14.21□□□□□ -0.13
CUX1-213ENST00000549414 MIDNQ504T8 468 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 GNPNAT1Q96EK6 184 aaPredicted RBP14.21□□□□□ -0.13
CUX1-213ENST00000549414 PIK3IP1Q96FE7 263 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 LINC00052Q96N35 136 aa14.21□□□□□ -0.13
CUX1-213ENST00000549414 PHF3Q92576 2039 aaKnown RBP14.21□□□□□ -0.14
CUX1-213ENST00000549414 WDR87Q6ZQQ6 2873 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 HMGB3O15347 200 aaKnown RBP14.21□□□□□ -0.14
CUX1-213ENST00000549414 KLK2P20151 261 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 OR2B8PP59922 312 aa14.21□□□□□ -0.14
CUX1-213ENST00000549414 CLPPQ16740 277 aaPredicted RBP14.21□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms