RNA–Protein interactions for RNA: ENST00000539504.5

SYNE1-237, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 3,768 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-237ENST00000539504 SPNS3Q6ZMD2 512 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 OR10AD1Q8NGE0 317 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 NEK7Q8TDX7 302 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 HPSE2Q8WWQ2 592 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 NTNG2Q96CW9 530 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 UCN2Q96RP3 112 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 GPR61Q9BZJ8 451 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 SLC25A31Q9H0C2 315 aa9.78□□□□□ -0.84
SYNE1-237ENST00000539504 C3orf85A0A1B0GTC6 90 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 ZNF587BE7ETH6 402 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 MSTNO14793 375 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 TRGC2P03986 189 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 KLK3P07288 261 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-237ENST00000539504 DTYMKP23919 212 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 HIKESHIQ53FT3 197 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 CXorf66Q5JRM2 361 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-237ENST00000539504 OR2T2Q6IF00 324 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 CMTM1Q8IZ96 169 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 NFAM1Q8NET5 270 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-237ENST00000539504 CPNE4Q96A23 557 aaPredicted RBP9.77□□□□□ -0.84
SYNE1-237ENST00000539504 TVP23CQ96ET8 276 aa9.77□□□□□ -0.84
SYNE1-237ENST00000539504 ABCA7Q8IZY2 2146 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 GFI1BQ5VTD9 330 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 C1QL4Q86Z23 238 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 OSR2Q8N2R0 312 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 ADPRHL1Q8NDY3 354 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 PIGCQ92535 297 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 SPSB1Q96BD6 273 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 PLEKHF2Q9H8W4 249 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 ADAM20O43506 726 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 FABP4P15090 132 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 EPHA1P21709 976 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 DYNLT3P51808 116 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 RAB11AP62491 216 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 RNASE11Q8TAA1 199 aaKnown RBP9.77□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF837Q96EG3 531 aaPredicted RBP9.77□□□□□ -0.85
SYNE1-237ENST00000539504 SPIN2AQ99865 258 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 SPIN2BQ9BPZ2 258 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 PRO1933Q9H354 126 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 GNG13Q9P2W3 67 aa9.77□□□□□ -0.85
SYNE1-237ENST00000539504 H3BP45 60 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 MPPED1O15442 326 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 NRASP01111 189 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 SRP19P09132 144 aaKnown RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 TMEM252Q8N6L7 170 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 OR6C1Q96RD1 312 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 KIAA1456Q9P272 454 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 A0A1W2PR77 199 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 ZFP92A6NM28 416 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 SCAF4O95104 1147 aaKnown RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 ERVFRD-1P60508 538 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 RPS18P62269 152 aaKnown RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 ELOBQ15370 118 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 PLCXD3Q63HM9 321 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF774Q6NX45 483 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 SSX9Q7RTT3 188 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 C17orf78Q8N4C9 275 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 OPA3Q9H6K4 179 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 DECR2Q9NUI1 292 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 P4HTMQ9NXG6 502 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 IGKV1-27A0A075B6S5 117 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 IFITM10A6NMD0 228 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 SEC14L6B5MCN3 397 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 HSPB6O14558 160 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 PPYP01298 95 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 CTSSP25774 331 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 RSPO1Q2MKA7 263 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 DPPA2Q7Z7J5 298 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 C17orf82Q86X59 251 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 MOB3AQ96BX8 217 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 SPACA9Q96E40 222 aaPredicted RBP9.76□□□□□ -0.85
SYNE1-237ENST00000539504 ANGPTL4Q9BY76 406 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 HSF4Q9ULV5 492 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 MTCH2Q9Y6C9 303 aa9.76□□□□□ -0.85
SYNE1-237ENST00000539504 BTBD17A6NE02 478 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HSD17B6O14756 317 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BKO60814 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 SCRG1O75711 98 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 PIAS2O75928 621 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 F10P00742 488 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 IGLV3-19P01714 112 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BJP06899 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BOP23527 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BBP33778 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 PTGDSP41222 190 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BDP58876 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BCP62807 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 TLE4Q04727 773 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 ZNF154Q13106 437 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST3H3Q16695 136 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST2H2BEQ16778 126 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 SLC25A53Q5H9E4 307 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-237ENST00000539504 RHBDD2Q6NTF9 364 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 SPSB3Q6PJ21 355 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 C5orf24Q7Z6I8 188 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 MAML2Q8IZL2 1156 aaPredicted RBP9.75□□□□□ -0.85
SYNE1-237ENST00000539504 LRTM2Q8N967 370 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 TMEM171Q8WVE6 324 aa9.75□□□□□ -0.85
SYNE1-237ENST00000539504 HIST1H2BHQ93079 126 aa9.75□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms