RNA–Protein interactions for RNA: ENST00000527720.5

USH1C-207, Transcript of USH1 protein network component harmonin, humanhuman

TSL 1 (best) BASIC

Gene USH1C, Length 2,278 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-207ENST00000527720 LINC00596Q86U02 117 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 FAM185AQ8N0U4 392 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 OR1S2Q8NGQ3 325 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 NANOS1Q8WY41 292 aaKnown RBP13.19□□□□□ -0.3
USH1C-207ENST00000527720 EXTL1Q92935 676 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 HIST1H2AAQ96QV6 131 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 FGF23Q9GZV9 251 aaPredicted RBP13.19□□□□□ -0.3
USH1C-207ENST00000527720 PLK3Q9H4B4 646 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 SHANK1Q9Y566 2161 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 TRAPPC2LH3BP13 241 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 OR5AC1P0C628 307 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 APLNRP35414 380 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 FXYD4P59646 89 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.19□□□□□ -0.3
USH1C-207ENST00000527720 TMEM178AQ8NBL3 297 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 SLAMF9Q96A28 289 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 WDYHV1Q96HA8 205 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 PLEKHA2Q9HB19 425 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 MPC1Q9Y5U8 109 aa13.19□□□□□ -0.3
USH1C-207ENST00000527720 CD300LBA8K4G0 201 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 ZNF732B4DXR9 585 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 NAPSAO96009 420 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 RPL12P30050 165 aaKnown RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 Q6ZPA2 131 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 LGI3Q8N145 548 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 OR5L1Q8NGL2 311 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 OR1K1Q8NGR3 316 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 TMED6Q8WW62 240 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 ARL11Q969Q4 196 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 SAT2Q96F10 170 aaPredicted RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 C18orf12Q96KH6 178 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 PRRX2Q99811 253 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 ASF1BQ9NVP2 202 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 LIPGQ9Y5X9 500 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 TRGV5A0A0B4J1U4 118 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 H7C1Q1 480 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 K7EPK0 472 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 NGFP01138 241 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 PPYP01298 95 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 GAPDHP04406 335 aaKnown RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 FAM157CP0CG43 387 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 CLN3Q13286 438 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 PDCD1Q15116 288 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 C3AR1Q16581 482 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 ZNF766Q5HY98 468 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 FBXW9Q5XUX1 488 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 FAM71E2Q8N5Q1 922 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 SREK1IP1Q8N9Q2 155 aaPredicted RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 BPIFCQ8NFQ6 507 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 GTF3AQ92664 365 aaKnown RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 FBXO9Q9UK97 447 aaPredicted RBP13.18□□□□□ -0.3
USH1C-207ENST00000527720 ZNF175Q9Y473 711 aa13.18□□□□□ -0.3
USH1C-207ENST00000527720 LOC105371267A0A1B0GV96 52 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 OR5B21A6NL26 309 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 ANKRD30BLA7E2S9 258 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 J3QW42 95 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 AADACP22760 399 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 SRPXP78539 464 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 ARG2P78540 354 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 OR5P3Q8WZ94 311 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 BCL2L2Q92843 193 aaPredicted RBP13.17□□□□□ -0.3
USH1C-207ENST00000527720 MSI2Q96DH6 328 aaKnown RBP13.17□□□□□ -0.3
USH1C-207ENST00000527720 ZDHHC11Q9H8X9 412 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 SPACA1Q9HBV2 294 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 Q9N2K0 584 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 ZC4H2Q9NQZ6 224 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 MTCH1Q9NZJ7 389 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 PRSS50Q9UI38 385 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 MED12LQ86YW9 2145 aa13.17□□□□□ -0.3
USH1C-207ENST00000527720 SLC22A20A6NK97 555 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 E5RGE8 158 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 IL18BPO95998 194 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 APOC3P02656 99 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 SPEM2Q0P670 501 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 BTN1A1Q13410 526 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 TRIP6Q15654 476 aaKnown RBP13.16□□□□□ -0.3
USH1C-207ENST00000527720 PHLDA2Q53GA4 152 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 ZNF573Q86YE8 665 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 IQCF2Q8IXL9 164 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 GLYATL2Q8WU03 294 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 RIMS4Q9H426 269 aaPredicted RBP13.16□□□□□ -0.3
USH1C-207ENST00000527720 TAF9BQ9HBM6 251 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 COQ3Q9NZJ6 369 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 CRIM1Q9NZV1 1036 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 LPAR3Q9UBY5 353 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 NSG2Q9Y328 171 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 KIR2DS1A0A191URI9 304 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 LRP3O75074 770 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 JTBO76095 146 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 DIRAS3O95661 229 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 DUSP1P28562 367 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 KIR2DS4P43632 304 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 KIR2DS1Q14954 304 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 SP6Q3SY56 376 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 IL34Q6ZMJ4 242 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 FOXRED2Q8IWF2 684 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 SPERTQ8NA61 448 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 DEFB127Q9H1M4 99 aa13.16□□□□□ -0.3
USH1C-207ENST00000527720 ZNF552Q9H707 407 aaPredicted RBP13.16□□□□□ -0.3
USH1C-207ENST00000527720 RHOFQ9HBH0 211 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 72.9 ms