RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 CTSZQ9UBR2 303 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 GLS2Q9UI32 602 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 PRRC2AP48634 2157 aaKnown RBP13.56□□□□□ -0.24
LSM1-204ENST00000522515 NOTCH2Q04721 2471 aa13.56□□□□□ -0.24
LSM1-204ENST00000522515 SETXQ7Z333 2677 aaKnown RBP13.55□□□□□ -0.24
LSM1-204ENST00000522515 CCDC168Q8NDH2 2452 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 CYSRT1A8MQ03 144 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 CHRM2P08172 466 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 SELLP14151 372 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 VEGFCP49767 419 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 MPV17LQ2QL34 196 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 CNPY1Q3B7I2 92 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 MZT2AQ6P582 158 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 LINC00596Q86U02 117 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 CLDND2Q8NHS1 167 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 MCFD2Q8NI22 146 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 CYYR1Q96J86 154 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 NXF2Q9GZY0 626 aaKnown RBP13.55□□□□□ -0.24
LSM1-204ENST00000522515 ATG5Q9H1Y0 275 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 PATZ1Q9HBE1 687 aaKnown RBP13.55□□□□□ -0.24
LSM1-204ENST00000522515 KAAG1Q9UBP8 84 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 PCDHB10Q9UN67 800 aa13.55□□□□□ -0.24
LSM1-204ENST00000522515 MAP1AP78559 2803 aaPredicted RBP13.55□□□□□ -0.24
LSM1-204ENST00000522515 A0A075B6Q4 140 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 A0A096LNT2 108 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 TRAV24A0A0B4J272 114 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A10PA6NDY2 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A18PA6NE21 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A16PA6NEW6 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A20PA6NIJ5 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 NKX6-3A6NJ46 265 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A8PA6NJQ4 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A7PA6NKC0 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A22PA8MWA6 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A12PA8MX19 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A5PA8MXJ8 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A23PA8MXZ1 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 CTDSP2O14595 271 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 SIGLEC5O15389 551 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 SOCS1O15524 211 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 PSPNO60542 156 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 HPGDSO60760 199 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FCN3O75636 299 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 WNT2P09544 360 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A15PP0C7V4 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A13PP0C7W8 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A14PP0C7W9 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FAM90A24PP0C7X0 464 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 RPS2P15880 293 aaKnown RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 LMO1P25800 156 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 LMO4P61968 165 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 IL13RA1P78552 427 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 MOGAT2Q3SYC2 334 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 C17orf107Q6ZR85 190 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 SLC36A1Q7Z2H8 476 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 CMTM4Q8IZR5 234 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 ZNF561Q8N587 486 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 ASCC1Q8N9N2 400 aaKnown RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 IFT22Q9H7X7 185 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 MIOXQ9UGB7 285 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 TMEM82A0PJX8 343 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 METTL21EPA6NDL7 271 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FOXI3A8MTJ6 420 aaPredicted RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 RAB27BO00194 218 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 SLC33A1O00400 549 aaPredicted RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 ZNF737O75373 536 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 IGHV2-5P01817 119 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 BLVRBP30043 206 aaPredicted RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 PITPNBP48739 271 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 TMEM50BP56557 158 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 SEC61A1P61619 476 aaKnown RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 UBE2NLQ5JXB2 153 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 ATAD3CQ5T2N8 411 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 BRICD5Q6PL45 260 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 RTN4RL2Q86UN3 420 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 FGFRL1Q8N441 504 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 POM121Q96HA1 1249 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 MED30Q96HR3 178 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 C6orf62Q9GZU0 229 aaPredicted RBP13.54□□□□□ -0.24
LSM1-204ENST00000522515 ABCG5Q9H222 651 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 MIXL1Q9H2W2 232 aa13.54□□□□□ -0.24
LSM1-204ENST00000522515 RNF223E7ERA6 249 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 F5H0A9 414 aaPredicted RBP13.53□□□□□ -0.24
LSM1-204ENST00000522515 HSPB6O14558 160 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 DVL1O14640 695 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 RGS5O15539 181 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 EIF4EP06730 217 aaKnown RBP13.53□□□□□ -0.24
LSM1-204ENST00000522515 ELK1P19419 428 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 USF1P22415 310 aaPredicted RBP13.53□□□□□ -0.24
LSM1-204ENST00000522515 CHATP28329 748 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 IL2RGP31785 369 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 ZNF841Q6ZN19 808 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 BPIFB2Q8N4F0 458 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 SUMF2Q8NBJ7 301 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 CHST4Q8NCG5 386 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 TMEM185AQ8NFB2 350 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 OR56B1Q8NGI3 324 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 NEIL1Q96FI4 390 aaPredicted RBP13.53□□□□□ -0.24
LSM1-204ENST00000522515 REG4Q9BYZ8 158 aa13.53□□□□□ -0.24
LSM1-204ENST00000522515 CHST6Q9GZX3 395 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms