RNA–Protein interactions for RNA: ENST00000520755.5

LSM1-203, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best) BASIC

Gene LSM1, Length 975 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-203ENST00000520755 SELENOIQ9C0D9 397 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 RHBDL2Q9NX52 303 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 COMMD3Q9UBI1 195 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 DUX4Q9UBX2 424 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 METRNQ9UJH8 293 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 ST3GAL6Q9Y274 331 aa12.77□□□□□ -0.37
LSM1-203ENST00000520755 OR2AT4A6NND4 320 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 CTDSP2O14595 271 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 HPGDSO60760 199 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 FCN3O75636 299 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 FSTL3O95633 263 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 FOSL1P15407 271 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 MUC1P15941 1255 aaPredicted RBP12.76□□□□□ -0.37
LSM1-203ENST00000520755 BMXP51813 675 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 IL13RA2Q14627 380 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 MOGAT2Q3SYC2 334 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 SPIN3Q5JUX0 258 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 Q6P435 159 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 LYPD2Q6UXB3 125 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 DCDC5Q6ZRR9 648 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 LAX1Q8IWV1 398 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 SAMD12Q8N8I0 201 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 MCFD2Q8NI22 146 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 MRPS24Q96EL2 167 aaKnown RBP12.76□□□□□ -0.37
LSM1-203ENST00000520755 PATZ1Q9HBE1 687 aaKnown RBP12.76□□□□□ -0.37
LSM1-203ENST00000520755 LPAR2Q9HBW0 351 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 OR14J1Q9UGF5 321 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 RAB22AQ9UL26 194 aa12.76□□□□□ -0.37
LSM1-203ENST00000520755 RFPL4AA6NLU0 287 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 FAM157AC9JC47 383 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 RFPL4AL1F8VTS6 287 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 HAND1O96004 215 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 IGHV4-31P0DP07 118 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 SELLP14151 372 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 GZMKP49863 264 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 SEC61A1P61619 476 aaKnown RBP12.75□□□□□ -0.37
LSM1-203ENST00000520755 TAF9Q16594 264 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 UBE2NLQ5JXB2 153 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 CMTM4Q8IZR5 234 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 FAM89BQ8N5H3 189 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 GAFA1Q96PS6 74 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 C6orf62Q9GZU0 229 aaPredicted RBP12.75□□□□□ -0.37
LSM1-203ENST00000520755 PTTG2Q9NZH5 202 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 CTSZQ9UBR2 303 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 MIOXQ9UGB7 285 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 A3GALT2U3KPV4 340 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 HIVEP1P15822 2718 aa12.75□□□□□ -0.37
LSM1-203ENST00000520755 F5H0A9 414 aaPredicted RBP12.74□□□□□ -0.37
LSM1-203ENST00000520755 RAB27BO00194 218 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 SOCS1O15524 211 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 ADAM20O43506 726 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 OR2H2O95918 312 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 WNT2P09544 360 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 ZNF16P17020 682 aaPredicted RBP12.74□□□□□ -0.37
LSM1-203ENST00000520755 ELK1P19419 428 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 CPT2P23786 658 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 GABRR1P24046 479 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 IKZF1Q13422 519 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 MPV17LQ2QL34 196 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 CYB5R2Q6BCY4 276 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 ZNF788Q6ZQV5 615 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 NLRC3Q7RTR2 1065 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 LINC00596Q86U02 117 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 FAM216BQ8N7L0 139 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 OR8B3Q8NGG8 313 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 MSI2Q96DH6 328 aaKnown RBP12.74□□□□□ -0.37
LSM1-203ENST00000520755 NEIL1Q96FI4 390 aaPredicted RBP12.74□□□□□ -0.37
LSM1-203ENST00000520755 OR8B2Q96RD0 313 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 CCL13Q99616 98 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 ABCG5Q9H222 651 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 IFT22Q9H7X7 185 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 PCDHB16Q9NRJ7 776 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 RCC2Q9P258 522 aaKnown RBP12.74□□□□□ -0.37
LSM1-203ENST00000520755 ACANP16112 2415 aa12.74□□□□□ -0.37
LSM1-203ENST00000520755 TRAV24A0A0B4J272 114 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 TMEM82A0PJX8 343 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A10PA6NDY2 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A18PA6NE21 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A16PA6NEW6 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A20PA6NIJ5 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 NKX6-3A6NJ46 265 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A8PA6NJQ4 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A7PA6NKC0 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A22PA8MWA6 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A12PA8MX19 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A5PA8MXJ8 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A23PA8MXZ1 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 SIRPB1O00241 398 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 SLC33A1O00400 549 aaPredicted RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 TMPRSS2O15393 492 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 NDUFA2O43678 99 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 PSPNO60542 156 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 ZNF737O75373 536 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 OR7C1O76099 320 aaPredicted RBP12.73□□□□□ -0.37
LSM1-203ENST00000520755 LY6G6DO95868 133 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A15PP0C7V4 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A13PP0C7W8 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A14PP0C7W9 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 FAM90A24PP0C7X0 464 aa12.73□□□□□ -0.37
LSM1-203ENST00000520755 CHATP28329 748 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms