RNA–Protein interactions for RNA: ENST00000518743.1

HMGB1P23-201, Transcript of high mobility group box 1 pseudogene 23, humanhuman

BASIC

Gene HMGB1P23, Length 568 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P23-201ENST00000518743 OR2A5Q96R48 311 aa3.43□□□□□ -1.86
HMGB1P23-201ENST00000518743 ZNF275Q9NSD4 429 aaPredicted RBP3.43□□□□□ -1.86
HMGB1P23-201ENST00000518743 CALYQ9NYX4 217 aa3.43□□□□□ -1.86
HMGB1P23-201ENST00000518743 MTCH1Q9NZJ7 389 aa3.43□□□□□ -1.86
HMGB1P23-201ENST00000518743 DKKL1Q9UK85 242 aa3.43□□□□□ -1.86
HMGB1P23-201ENST00000518743 ZNF816-ZNF321PA0A0X1KG74 233 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TMEM120BA0PK00 339 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 KRTAP16-1A8MUX0 517 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TNFSF11O14788 317 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 SLC31A2O15432 143 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TRAF3IP2O43734 574 aaPredicted RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 DEDDO75618 318 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TSPAN13O95857 204 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 THY1P04216 161 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 HLA-DQB2P05538 268 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 CRYGCP07315 174 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 UBCP0CG48 685 aaKnown RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 DCKP27707 260 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 FMO3P31513 532 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 NPBWR2P48146 333 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 PPOXP50336 477 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 BCAP31P51572 246 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 SELENBP1Q13228 472 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 CLINT1Q14677 625 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 DEFB112Q30KQ8 113 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 PIGGQ5H8A4 983 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 ANKRD26P1Q6NSI1 321 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 Q6ZSR3 168 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 HDDC2Q7Z4H3 204 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 C1orf174Q8IYL3 243 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 ZCCHC24Q8N2G6 241 aaKnown RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 C14orf178Q8N769 122 aaPredicted RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 INO80EQ8NBZ0 244 aaPredicted RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 PROKR2Q8NFJ6 384 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 OR10H4Q8NGA5 316 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 OR52E2Q8NGJ4 325 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 OR2A1Q8NGT9 310 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 LYPD6BQ8NI32 183 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 SLC7A13Q8TCU3 470 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 BLOC1S5Q8TDH9 187 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TMEM246Q9BRR3 403 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 LLPHQ9BRT6 129 aaKnown RBP3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 C1QTNF6Q9BXI9 259 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 KRTAP1-5Q9BYS1 174 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 TPK1Q9H3S4 243 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 FAM96AQ9H5X1 160 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 VNN3Q9NY84 501 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 PAK5Q9P286 719 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 ING4Q9UNL4 249 aa3.42□□□□□ -1.86
HMGB1P23-201ENST00000518743 PCNX3Q9H6A9 2034 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 IGKV3D-11A0A0A0MRZ8 115 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 TRAV39A0A0B4J263 110 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 A0A1B0GU03 582 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 SIGLEC16A6NMB1 481 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 ATP6V1G2-DDX39BF2Z307 99 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 EIF4E2O60573 245 aaKnown RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 HSBP1O75506 76 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 GCM2O75603 506 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 AQP8O94778 261 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 CLIC3O95833 236 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 SRMP19623 302 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 VDAC2P45880 294 aaPredicted RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 OR3A4PP47883 348 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 STXBP1P61764 594 aaKnown RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 ZNF92Q03936 586 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 PRPSAP1Q14558 356 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 ITIH4Q14624 930 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 DEFB134Q4QY38 66 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 FBXO48Q5FWF7 155 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 COA6Q5JTJ3 125 aaKnown RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 LY6G6FQ5SQ64 297 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 AVPI1Q5T686 147 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 ZNF470Q6ECI4 717 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 ULK3Q6PHR2 472 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 PUSL1Q8N0Z8 303 aaKnown RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 OTUD6BQ8N6M0 293 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 SPERTQ8NA61 448 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 OR10G9Q8NGN4 311 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 PKNOX2Q96KN3 472 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 KCNS3Q9BQ31 491 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 OSBPL10Q9BXB5 764 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 HAUS4Q9H6D7 363 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 IFNKQ9P0W0 207 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 TAC3Q9UHF0 121 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 STK38LQ9Y2H1 464 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 SLC25A15Q9Y619 301 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 BZW2Q9Y6E2 419 aaKnown RBP3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 KIAA2026Q5HYC2 2103 aa3.41□□□□□ -1.86
HMGB1P23-201ENST00000518743 MUC2Q02817 5179 aa3.4□□□□□ -1.86
HMGB1P23-201ENST00000518743 TRAV6A0A075B6T7 132 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 TRAV40A0A0B4J280 105 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 SERPINE3A8MV23 424 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 C12orf77C9JDV5 145 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 H3BNH8 94 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 EIF3HO15372 352 aaKnown RBP eCLIP3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 BCL2L11O43521 198 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 SRP72O76094 671 aaKnown RBP3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 MBP02144 154 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 OR4A8P0C604 315 aa3.4□□□□□ -1.87
HMGB1P23-201ENST00000518743 SLC35G6P0C7Q6 338 aa3.4□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms