RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 ARHGAP21Q5T5U3 1957 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 A0A1W2PRS3 328 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 B4DGG1 531 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 TNFRSF10CO14798 259 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 ZNF20P17024 532 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 MESP2Q0VG99 397 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 ASTLQ6HA08 431 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 ABHD17CQ6PCB6 329 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 TCF23Q7RTU1 214 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 LHFPL1Q86WI0 220 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 LRRC25Q8N386 305 aaPredicted RBP10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 OR4B1Q8NGF8 309 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 PSMF1Q92530 271 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 PELI2Q9HAT8 420 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 RYDENQ9NUL5 291 aaKnown RBP10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 NAT8Q9UHE5 227 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 LAMA3Q16787 3333 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 SH2D1BO14796 132 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 MMP23AO75900 390 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 RUNX2Q13950 521 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 OR8G5Q8NG78 346 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 KCNE4Q8WWG9 221 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 PTX4Q96A99 478 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 SLC46A1Q96NT5 459 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 WNT10AQ9GZT5 417 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 KIR3DX1Q9H7L2 352 aa10.53□□□□□ -0.72
LIMCH1-213ENST00000511496 IGSF23A1L1A6 192 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 CEACAM18A8MTB9 384 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 RNF212BA8MTL3 300 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 GNG7O60262 68 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 RENP00797 406 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 IGLC2P0DOY2 106 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 IGLC3P0DOY3 106 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 PIGPP57054 158 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 ELAVL3Q14576 367 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 SMIM21Q3B7S5 101 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 PHLDA2Q53GA4 152 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 C22orf39Q6P5X5 142 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 RBM24Q9BX46 236 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 SOHLH2Q9NX45 425 aa10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 TCF20Q9UGU0 1960 aaKnown RBP10.52□□□□□ -0.72
LIMCH1-213ENST00000511496 COL16A1Q07092 1604 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 A0A0A6YYD4 124 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 K7EQS6 105 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 K7ESM1 405 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 HIST1H1DP16402 221 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF93P35789 620 aaPredicted RBP10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 DYNLT3P51808 116 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 FXYD4P59646 89 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 RPL23P62829 140 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 SHBQ15464 509 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 VWA1Q6PCB0 445 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 BAGE3Q86Y29 109 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 BAGE2Q86Y30 109 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 IMMP2LQ96T52 175 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 PARLQ9H300 379 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 COL4A5P29400 1685 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 LOC101059948A0A1B0GTJ6 334 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 CLEC3AO75596 197 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 SERF1AO75920 110 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 CTXN2P0C2S0 81 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 ACRP10323 421 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 BCL6P41182 706 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 TMEM50BP56557 158 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 IL13RA2Q14627 380 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 MSMO1Q15800 293 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 C1orf140Q5VVS0 124 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 GLIPR1L1Q6UWM5 242 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 NIT1Q86X76 327 aa10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 CISD1Q9NZ45 108 aaKnown RBP10.52□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF891A8MT65 544 aaPredicted RBP10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 C11orf98E9PRG8 122 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CPMP14384 443 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 GLB1P16278 677 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 IL3RAP26951 378 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 ARR3P36575 388 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 BLKP51451 505 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 ABCA11PQ4W5N1 156 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC18B1Q6NT16 456 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 ADIPOR1Q96A54 375 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 GPR146Q96CH1 333 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CAPNS2Q96L46 248 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 SGIP1Q9BQI5 828 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 SLC35D1Q9NTN3 355 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 RHBDD3Q9Y3P4 386 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 RTTNQ86VV8 2226 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CLEC18AA5D8T8 446 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 ZNF74Q16587 644 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CLEC18CQ8NCF0 446 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CENPMQ9NSP4 180 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 SSSCA1O60232 199 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 SYNGR4O95473 234 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 DUSP1P28562 367 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 PAFAH1B2P68402 229 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 AMMECR1LQ6DCA0 310 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CATSPERDQ86XM0 798 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 RNF114Q9Y508 228 aa10.51□□□□□ -0.73
LIMCH1-213ENST00000511496 CNTRLQ7Z7A1 2325 aa10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 NUP210Q8TEM1 1887 aaPredicted RBP10.5□□□□□ -0.73
LIMCH1-213ENST00000511496 LINC01553A4QN01 128 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms