RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 ETFDHQ16134 617 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 MRM1Q6IN84 353 aaKnown RBP11.62□□□□□ -0.55
PTPRF-215ENST00000496447 MOGAT3Q86VF5 341 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 OR51M1Q9H341 326 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 MRPL22Q9NWU5 206 aaKnown RBP11.62□□□□□ -0.55
PTPRF-215ENST00000496447 EXOGQ9Y2C4 368 aaKnown RBP11.62□□□□□ -0.55
PTPRF-215ENST00000496447 V9GYH0 126 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 SMCHD1A6NHR9 2005 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 A0A1W2PN81 502 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 ERVH48-1M5A8F1 160 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 HRKO00198 91 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 PLPP2O43688 288 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 CHRNA7P36544 502 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 ATG4DQ86TL0 474 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-215ENST00000496447 OR4F17Q8NGA8 305 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 ABHD3Q8WU67 409 aa11.62□□□□□ -0.55
PTPRF-215ENST00000496447 NEIL1Q96FI4 390 aaPredicted RBP11.62□□□□□ -0.55
PTPRF-215ENST00000496447 IGHV3-13P01766 116 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 IGHV3-7P01780 117 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 TOMM20LQ6UXN7 152 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF764Q96H86 408 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-215ENST00000496447 SMIM7Q9BQ49 75 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 C1QL3Q5VWW1 255 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 NCR3LG1Q68D85 454 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 OR8B12Q8NGG6 310 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 RXFP4Q8TDU9 374 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 FAM122AQ96E09 287 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 TMPRSS13Q9BYE2 586 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-215ENST00000496447 PYCARD-AS1I3L0S3 204 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 TMEM171Q8WVE6 324 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 UQCC1Q9NVA1 299 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 MASP2O00187 686 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 LIFP15018 202 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 CBLN2Q8IUK8 224 aa11.61□□□□□ -0.55
PTPRF-215ENST00000496447 NOL4LQ96MY1 436 aaPredicted RBP11.61□□□□□ -0.55
PTPRF-215ENST00000496447 A0A1W2PPV9 198 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CDC42EP2O14613 210 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 DUS4LO95620 317 aaKnown RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF17P17021 662 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 LSM6P62312 80 aaKnown RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CD300LDQ6UXZ3 194 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CLCF1Q9UBD9 225 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 ONECUT2O95948 504 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 TMPRSS3P57727 454 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 GMPPAQ96IJ6 420 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 TTTY12Q9BZ98 90 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 GP1BAP07359 652 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 PCP4P48539 62 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 HIKESHIQ53FT3 197 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 NCMAPQ5T1S8 102 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 OR2M3Q8NG83 312 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 MS4A5Q9H3V2 200 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 GPR35Q9HC97 309 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 RNF7Q9UBF6 113 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 SCN1AP35498 2009 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 SPINK2P20155 84 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CCKARP32238 428 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 C21orf58P58505 322 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF429Q86V71 674 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 SLC24A4Q8NFF2 622 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 PIK3IP1Q96FE7 263 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CTDSP1Q9GZU7 261 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 MS4A7Q9GZW8 240 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 NXF2Q9GZY0 626 aaKnown RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 LSM2Q9Y333 95 aaKnown RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 GFRA3O60609 400 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 TMEM267Q0VDI3 215 aaPredicted RBP11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CNTD2Q9H8S5 307 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 FLRT3Q9NZU0 649 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 TINAGQ9UJW2 476 aa11.6□□□□□ -0.55
PTPRF-215ENST00000496447 CST4P01036 141 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 SSX1Q16384 188 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 TNXAQ16473 311 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 C1orf185Q5T7R7 199 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 FAM103A1Q9BTL3 118 aaKnown RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 TMEM208Q9BTX3 173 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 RSRP1Q9BUV0 290 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 SLC35B3Q9H1N7 401 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 RGPD4Q7Z3J3 1758 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 BRWD1Q9NSI6 2320 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 HMGA2P52926 109 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 MESTQ5EB52 335 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 C9orf40Q8IXQ3 194 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 BCL2L2Q92843 193 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 UCN2Q96RP3 112 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 HSD17B10Q99714 261 aaKnown RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 TMED3Q9Y3Q3 217 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 CLDN34H7C241 214 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 K7ESF4 209 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 ZNF205O95201 554 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 IFITM3Q01628 133 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 LGALSLQ3ZCW2 172 aaPredicted RBP11.59□□□□□ -0.55
PTPRF-215ENST00000496447 ZDHHC22Q8N966 263 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 OR2H1Q9GZK4 316 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 GOLT1BQ9Y3E0 138 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 LAMB2P55268 1798 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 C3orf85A0A1B0GTC6 90 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 LANCL1O43813 399 aa11.59□□□□□ -0.55
PTPRF-215ENST00000496447 WNT1P04628 370 aa11.59□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms