RNA–Protein interactions for RNA: ENST00000491791.1

USP4-214, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 821 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-214ENST00000491791 ARL6Q9H0F7 186 aa9.21□□□□□ -0.94
USP4-214ENST00000491791 ZNF286AQ9HBT8 521 aa9.21□□□□□ -0.94
USP4-214ENST00000491791 SPACA1Q9HBV2 294 aa9.21□□□□□ -0.94
USP4-214ENST00000491791 C12orf4Q9NQ89 552 aa9.21□□□□□ -0.94
USP4-214ENST00000491791 GPR160Q9UJ42 338 aa9.21□□□□□ -0.94
USP4-214ENST00000491791 C14orf166Q9Y224 244 aaKnown RBP9.21□□□□□ -0.94
USP4-214ENST00000491791 FXYD6-FXYD2A0A087WZ82 144 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 CRYM-AS1A6NIL9 109 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 ANKRD30BLA7E2S9 258 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 VAMP1P23763 118 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 ARPC4P59998 168 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 UBA52P62987 128 aaKnown RBP9.2□□□□□ -0.94
USP4-214ENST00000491791 GNG3P63215 75 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 MRPL49Q13405 166 aaKnown RBP9.2□□□□□ -0.94
USP4-214ENST00000491791 TBC1D28Q2M2D7 210 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 PIGYQ3MUY2 71 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 NKAPLQ5M9Q1 402 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 SLC25A26Q70HW3 274 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 MDP1Q86V88 176 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 ZNF573Q86YE8 665 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 C1orf174Q8IYL3 243 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 C17orf78Q8N4C9 275 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 SLC30A7Q8NEW0 376 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 OR5M9Q8NGP3 310 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 THAP6Q8TBB0 222 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 HIST1H2AAQ96QV6 131 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 RNF126Q9BV68 326 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 PAPOLGQ9BWT3 736 aaKnown RBP9.2□□□□□ -0.94
USP4-214ENST00000491791 FXYD6Q9H0Q3 95 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 OBP2BQ9NPH6 170 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 PLSCR4Q9NRQ2 329 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 DNAJB11Q9UBS4 358 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 KCNMB2Q9Y691 235 aa9.2□□□□□ -0.94
USP4-214ENST00000491791 COL12A1Q99715 3063 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 LRRK2Q5S007 2527 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 TEX13DA0A0J9YY54 714 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 ZNF732B4DXR9 585 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 F8VVB4 439 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 F8VWA3 439 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 SDCBPO00560 298 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 BCL2L11O43521 198 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 IFNA2P01563 188 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 WNT2P09544 360 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 CTXN2P0C2S0 81 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 RAC2P15153 192 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 CBR1P16152 277 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 BCL3P20749 454 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 IGHV1-2P23083 117 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 GLRA1P23415 457 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 PTGER4P35408 488 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 SERPINF1P36955 418 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 KIR2DL2P43627 348 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 NPBWR2P48146 333 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 NAAAQ02083 359 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 TLE1Q04724 770 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 ANKRD55Q3KP44 614 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 HIKESHIQ53FT3 197 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 C9orf135Q5VTT2 229 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 SHEQ5VZ18 495 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 RGS7BPQ6MZT1 257 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 ZNF880Q6PDB4 577 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 PRSS54Q6PEW0 395 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 P4HA3Q7Z4N8 544 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 EIF4E3Q8N5X7 224 aaKnown RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 MOB3AQ96BX8 217 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 CYYR1Q96J86 154 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 C2orf50Q96LR7 162 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 ZNF2Q9BSG1 426 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 HDHD3Q9BSH5 251 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 PDCD10Q9BUL8 212 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 SLC25A32Q9H2D1 315 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 OR51I2Q9H344 312 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 TMEM165Q9HC07 324 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 ZNF701Q9NV72 531 aaPredicted RBP9.19□□□□□ -0.94
USP4-214ENST00000491791 TREM2Q9NZC2 230 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 MTCH1Q9NZJ7 389 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 TUBD1Q9UJT1 453 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 CSAG2Q9Y5P2 127 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 FREM1Q5H8C1 2179 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 RTTNQ86VV8 2226 aa9.19□□□□□ -0.94
USP4-214ENST00000491791 FLNCQ14315 2725 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 A0A1B0GWJ7 208 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 DIRAS3O95661 229 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 IGKV3-15P01624 115 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 NMBP08949 121 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 SELEP16581 610 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 ERVK11-1P61568 191 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 RND3P61587 244 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 PMP22Q01453 160 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 EIF2S3LQ2VIR3 472 aaKnown RBP9.18□□□□□ -0.94
USP4-214ENST00000491791 C6orf183Q5T699 404 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 Q6ZPA2 131 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 KCTD9Q7L273 389 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 LDLRAD3Q86YD5 345 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 SGPP2Q8IWX5 399 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 Q8IYB0 196 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 SLC38A6Q8IZM9 456 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 FAM185AQ8N0U4 392 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 GAPTQ8N292 157 aa9.18□□□□□ -0.94
USP4-214ENST00000491791 POC1AQ8NBT0 407 aa9.18□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 42.9 ms