RNA–Protein interactions for RNA: ENST00000487354.1

MCF2L-228, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

TSL 3

Gene MCF2L, Length 553 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-228ENST00000487354 BCL3P20749 454 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 CHATP28329 748 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 MS4A2Q01362 244 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 ZNF322Q6U7Q0 402 aaPredicted RBP12.06□□□□□ -0.48
MCF2L-228ENST00000487354 TRAPPC6BQ86SZ2 158 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 CHST5Q9GZS9 411 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 ZNF446Q9NWS9 450 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 ZMAT5Q9UDW3 170 aaKnown RBP12.06□□□□□ -0.48
MCF2L-228ENST00000487354 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP12.06□□□□□ -0.48
MCF2L-228ENST00000487354 GTF2A1LQ9UNN4 478 aa12.06□□□□□ -0.48
MCF2L-228ENST00000487354 TRBV2A0A0J9YWF9 115 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 OOSP1A8MZH6 123 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 H3BSH0 61 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 IGHG2P01859 326 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 GLIPR1P48060 266 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 CXCR4P61073 352 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 DIAPH2-AS1Q14236 149 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 GK3PQ14409 553 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 C17orf58Q2M2W7 97 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 KLHL22Q53GT1 634 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 SLX4IPQ5VYV7 408 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 OR52W1Q6IF63 320 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 LCNL1Q6ZST4 164 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 SSX6Q7RTT6 188 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 THNSL2Q86YJ6 484 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 STPG2Q8N412 459 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 OR56B4Q8NH76 319 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 COQ2Q96H96 371 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 GAL3ST2Q9H3Q3 398 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 TAS2R3Q9NYW6 316 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 SLC7A11Q9UPY5 501 aa12.05□□□□□ -0.48
MCF2L-228ENST00000487354 SIRPB1O00241 398 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 RPLP1P05386 114 aaKnown RBP12.04□□□□□ -0.48
MCF2L-228ENST00000487354 CEACAM3P40198 252 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 ECI1P42126 302 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 ARHGDIBP52566 201 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 SNU13P55769 128 aaKnown RBP12.04□□□□□ -0.48
MCF2L-228ENST00000487354 BCDIN3DQ7Z5W3 292 aaKnown RBP12.04□□□□□ -0.48
MCF2L-228ENST00000487354 SBSPONQ8IVN8 264 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 ENTHD1Q8IYW4 607 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 FAM58AQ8N1B3 248 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 RCHY1Q96PM5 261 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 CNN2Q99439 309 aaKnown RBP12.04□□□□□ -0.48
MCF2L-228ENST00000487354 DCLRE1BQ9H816 532 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 ADGRL4Q9HBW9 690 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 TAGLN3Q9UI15 199 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 SNX5Q9Y5X3 404 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 TMEM14AQ9Y6G1 99 aa12.04□□□□□ -0.48
MCF2L-228ENST00000487354 TRGV10A0A0A0MS01 117 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 IGKV1-9A0A0C4DH69 117 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 IGKV1-12A0A0C4DH73 117 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 SERPINE3A8MV23 424 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 FGF16O43320 207 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 OR2H2O95918 312 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 IGKV1D-12P01611 117 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 FAM106CPP0CH98 169 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 CGB3P0DN86 165 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 CGB7P0DN87 165 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 FUT6P51993 359 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 GP2P55259 537 aaKnown RBP12.03□□□□□ -0.48
MCF2L-228ENST00000487354 RAB25P57735 213 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 AESQ08117 197 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 FHL3Q13643 280 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 ODF4Q2M2E3 257 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 SPIN3Q5JUX0 258 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 C9orf66Q5T8R8 295 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 CCDC144NLQ6NUI1 221 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 C16orf89Q6UX73 402 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 CATSPERDQ86XM0 798 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 Q8IYB0 196 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 COMMD1Q8N668 190 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 DRAM1Q8N682 238 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 RNF152Q8N8N0 203 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 CREB3L1Q96BA8 519 aa12.03□□□□□ -0.48
MCF2L-228ENST00000487354 ARGLU1Q9NWB6 273 aaPredicted RBP12.03□□□□□ -0.48
MCF2L-228ENST00000487354 ODAMA1E959 279 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 M0R129 80 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 PRKYO43930 277 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 SNX3O60493 162 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 RAP2AP10114 183 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 PRKACAP17612 351 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 MNDAP41218 407 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 PTGFRP43088 359 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 CDC42P60953 191 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 RBM39Q14498 530 aaKnown RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 FAM98BQ52LJ0 330 aaKnown RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 SLC35E3Q7Z769 313 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 DHFR2Q86XF0 187 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 SLC35F2Q8IXU6 374 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 ADGRG5Q8IZF4 528 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 Q8NFD4 153 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 OR5M8Q8NGP6 311 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 OR8U1Q8NH10 309 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 TOMM40LQ969M1 308 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 RNF166Q96A37 237 aaPredicted RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 BORCS8Q96FH0 119 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 KIRREL1Q96J84 757 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 PPIL3Q9H2H8 161 aaKnown RBP12.02□□□□□ -0.49
MCF2L-228ENST00000487354 HMG20AQ9NP66 347 aa12.02□□□□□ -0.49
MCF2L-228ENST00000487354 TVP23BQ9NYZ1 205 aa12.02□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms