RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 A0A0A6YYD4 124 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 TMEM272A0A1B0GTI8 110 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 PSPNO60542 156 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 ZNF780AO75290 641 aaPredicted RBP12.27□□□□□ -0.45
COL9A3-209ENST00000469852 ZNF737O75373 536 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 PAHP00439 452 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 IL1AP01583 271 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 UBBP0CG47 229 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 GTF2F2P13984 249 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 SNRPBP14678 240 aaKnown RBP12.27□□□□□ -0.45
COL9A3-209ENST00000469852 EFNB2P52799 333 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 TMBIM6P55061 237 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 IL13RA1P78552 427 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 LCN2P80188 198 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 SCN1BQ07699 218 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 TAF9Q16594 264 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 NHLRC3Q5JS37 347 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 WDR25Q64LD2 544 aaPredicted RBP12.27□□□□□ -0.45
COL9A3-209ENST00000469852 C17orf107Q6ZR85 190 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 SLC36A1Q7Z2H8 476 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 RTN4RL2Q86UN3 420 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 TMEM185AQ8NFB2 350 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 ISOC1Q96CN7 298 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 MSI2Q96DH6 328 aaKnown RBP12.27□□□□□ -0.45
COL9A3-209ENST00000469852 Q96M66 194 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 NICN1Q9BSH3 213 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 SELENOIQ9C0D9 397 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 DCSTAMPQ9H295 470 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 GHRLQ9UBU3 117 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 OR5V1Q9UGF6 321 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP12.27□□□□□ -0.452e-10■■□□□ 12.3
COL9A3-209ENST00000469852 SVEP1Q4LDE5 3571 aa12.27□□□□□ -0.45
COL9A3-209ENST00000469852 ABCA1O95477 2261 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 TRAV24A0A0B4J272 114 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 C22orf46C9J442 243 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 H3BMQ9 156 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 SLC33A1O00400 549 aaPredicted RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CHRM2P08172 466 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ZNF44P15621 663 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ZNF16P17020 682 aaPredicted RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 BMXP51813 675 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CAPZA1P52907 286 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 GNB2P62879 340 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 RPS27AP62979 156 aaKnown RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 GPR176Q14439 515 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 IL13RA2Q14627 380 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ESCO2Q56NI9 601 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 IDNKQ5T6J7 187 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 FIP1L1Q6UN15 594 aaKnown RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 NLRC3Q7RTR2 1065 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ZNF561Q8N587 486 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ASCC1Q8N9N2 400 aaKnown RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 OR4S1Q8NGB4 309 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 RAB2BQ8WUD1 216 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ST8SIA4Q92187 359 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 SLC25A46Q96AG3 418 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 MED30Q96HR3 178 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 SSBP3Q9BWW4 388 aaPredicted RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CHST6Q9GZX3 395 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 SHARPINQ9H0F6 387 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CST11Q9H112 138 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 SEBOXQ9HB31 216 aaPredicted RBP12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CLN8Q9UBY8 286 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 CSPG4Q6UVK1 2322 aa12.26□□□□□ -0.45
COL9A3-209ENST00000469852 ANK3Q12955 4377 aaKnown RBP12.25□□□□□ -0.45
COL9A3-209ENST00000469852 TLN2Q9Y4G6 2542 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 A8MXK9 166 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 HSPB6O14558 160 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 SH2D1BO14796 132 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 DEGS1O15121 323 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 NDUFB3O43676 98 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 TK1P04183 234 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 INHBBP09529 407 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 GABRR1P24046 479 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 LMO1P25800 156 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 OR3A1P47881 315 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 PAX2Q02962 417 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 SIGIRRQ6IA17 410 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 BRICD5Q6PL45 260 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 USP43Q70EL4 1123 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 OR2W3Q7Z3T1 314 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 OR5H6Q8NGV6 325 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 KCNG3Q8TAE7 436 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 LGALS14Q8TCE9 139 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 TMEM59Q9BXS4 323 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 LPAR5Q9H1C0 372 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 PPA2Q9H2U2 334 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 MMP26Q9NRE1 261 aa12.25□□□□□ -0.45
COL9A3-209ENST00000469852 SLC25A10Q9UBX3 287 aaPredicted RBP12.25□□□□□ -0.45
COL9A3-209ENST00000469852 DPPA5A6NC42 116 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 K7N7A8 449 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 OR7C1O76099 320 aaPredicted RBP12.24□□□□□ -0.45
COL9A3-209ENST00000469852 HEXAP06865 529 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 NDUFB7P17568 137 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 FOXB2Q5VYV0 432 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 BTN2A1Q7KYR7 527 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 BPIFB2Q8N4F0 458 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 TPRX1Q8N7U7 411 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 LINC01356Q8N9X3 169 aa12.24□□□□□ -0.45
COL9A3-209ENST00000469852 DACT3Q96B18 629 aaPredicted RBP12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms