RNA–Protein interactions for RNA: ENST00000444951.5

LIME1-202, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS ALT2 TSL 3

Gene LIME1, Length 451 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-202ENST00000444951 DUX4L5P0CJ88 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L6P0CJ89 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L7P0CJ90 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 ZNF44P15621 663 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 RPS2P15880 293 aaKnown RBP14.35□□□□□ -0.11
LIME1-202ENST00000444951 SLC25A16P16260 332 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 ZNF182P17025 639 aaPredicted RBP14.35□□□□□ -0.11
LIME1-202ENST00000444951 SOX6P35712 828 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 EFNB2P52799 333 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 CAPZA1P52907 286 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 RBM11P57052 281 aaKnown RBP14.35□□□□□ -0.11
LIME1-202ENST00000444951 QRFPP83859 136 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 TAF9Q16594 264 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4L9Q6RFH8 374 aaPredicted RBP14.35□□□□□ -0.11
LIME1-202ENST00000444951 SPICQ8N5J4 248 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 CD177Q8N6Q3 437 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 FAM216BQ8N7L0 139 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 OR51T1Q8NGJ9 327 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 OR5H6Q8NGV6 325 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 CLDND2Q8NHS1 167 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 ANGPTL6Q8NI99 470 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DYNC2LI1Q8TCX1 351 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 RHOFQ9HBH0 211 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 ZNF581Q9P0T4 197 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 DUX4Q9UBX2 424 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 GLS2Q9UI32 602 aa14.35□□□□□ -0.11
LIME1-202ENST00000444951 A6NHS1 94 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 RNF212BA8MTL3 300 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 TMEM14DPA8MWL7 114 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 ZNF701M0R085 212 aaPredicted RBP14.34□□□□□ -0.11
LIME1-202ENST00000444951 SH2D1BO14796 132 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 GEMIN2O14893 280 aaKnown RBP14.34□□□□□ -0.11
LIME1-202ENST00000444951 DEGS1O15121 323 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 SELLP14151 372 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 CFPP27918 469 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 RANBP1P43487 201 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 COL10A1Q03692 680 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 LOXL1Q08397 574 aaPredicted RBP14.34□□□□□ -0.11
LIME1-202ENST00000444951 TMEM155Q4W5P6 130 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 SPIN3Q5JUX0 258 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 DCDC5Q6ZRR9 648 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 OR2W3Q7Z3T1 314 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 ASCC1Q8N9N2 400 aaKnown RBP14.34□□□□□ -0.11
LIME1-202ENST00000444951 Q8NFD4 153 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 NICN1Q9BSH3 213 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 BATF3Q9NR55 127 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 COMMD3Q9UBI1 195 aa14.34□□□□□ -0.11
LIME1-202ENST00000444951 HSPB6O14558 160 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 OR7C1O76099 320 aaPredicted RBP14.33□□□□□ -0.12
LIME1-202ENST00000444951 AMY2BP19961 511 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 USF1P22415 310 aaPredicted RBP14.33□□□□□ -0.12
LIME1-202ENST00000444951 RPS27AP62979 156 aaKnown RBP14.33□□□□□ -0.12
LIME1-202ENST00000444951 ZNF146Q15072 292 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 CHRFAM7AQ494W8 412 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ATAD3CQ5T2N8 411 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ZNRF1Q8ND25 227 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 TMEM185AQ8NFB2 350 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 Q96M66 194 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 GAFA1Q96PS6 74 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ATG5Q9H1Y0 275 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ZNF665Q9H7R5 613 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ABRACLQ9P1F3 81 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 ZNF222Q9UK12 451 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 RAB22AQ9UL26 194 aa14.33□□□□□ -0.12
LIME1-202ENST00000444951 LDLRAD4O15165 306 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 NDUFA2O43678 99 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 OR2H2O95918 312 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 IGHV4-31P0DP07 118 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 ZNF16P17020 682 aaPredicted RBP14.32□□□□□ -0.12
LIME1-202ENST00000444951 IL2RGP31785 369 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 VEGFCP49767 419 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 IL13RA1P78552 427 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 IL13RA2Q14627 380 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 Q6P435 159 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 BRICD5Q6PL45 260 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 ZNF788Q6ZQV5 615 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 SLC36A1Q7Z2H8 476 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 FGFRL1Q8N441 504 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 SAMD12Q8N8I0 201 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 OR8B3Q8NGG8 313 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 AP3S1Q92572 193 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 MRPS24Q96EL2 167 aaKnown RBP14.32□□□□□ -0.12
LIME1-202ENST00000444951 OR8B2Q96RD0 313 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 URM1Q9BTM9 101 aaKnown RBP14.32□□□□□ -0.12
LIME1-202ENST00000444951 CHST6Q9GZX3 395 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 LPAR5Q9H1C0 372 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 PATZ1Q9HBE1 687 aaKnown RBP14.32□□□□□ -0.12
LIME1-202ENST00000444951 ING3Q9NXR8 418 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 CCDC59Q9P031 241 aaKnown RBP14.32□□□□□ -0.12
LIME1-202ENST00000444951 CTSZQ9UBR2 303 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 MIOXQ9UGB7 285 aa14.32□□□□□ -0.12
LIME1-202ENST00000444951 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.32□□□□□ -0.124e-7■■■■□ 21.5
LIME1-202ENST00000444951 A0A0A6YYD4 124 aa14.31□□□□□ -0.12
LIME1-202ENST00000444951 TNFRSF13BO14836 293 aaPredicted RBP14.31□□□□□ -0.12
LIME1-202ENST00000444951 FSTL3O95633 263 aa14.31□□□□□ -0.12
LIME1-202ENST00000444951 IGHV2-5P01817 119 aa14.31□□□□□ -0.12
LIME1-202ENST00000444951 CHRM2P08172 466 aa14.31□□□□□ -0.12
LIME1-202ENST00000444951 CPT2P23786 658 aa14.31□□□□□ -0.12
LIME1-202ENST00000444951 SEC61A1P61619 476 aaKnown RBP14.31□□□□□ -0.12
LIME1-202ENST00000444951 NKAPLQ5M9Q1 402 aa14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms