RNA–Protein interactions for RNA: ENST00000435823.1

COL28A1-203, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL28A1, Length 678 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-203ENST00000435823 C1orf122Q6ZSJ8 110 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 PRSS48Q7RTY5 328 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 BCL6BQ8N143 479 aaPredicted RBP9.42□□□□□ -0.9
COL28A1-203ENST00000435823 OR8H2Q8N162 312 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 SIGLECL1Q8N7X8 197 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 OR4M1Q8NGD0 313 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 ZFAND2BQ8WV99 257 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 UFD1Q92890 307 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 OR5M11Q96RB7 305 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 METTL8Q9H825 291 aaKnown RBP9.42□□□□□ -0.9
COL28A1-203ENST00000435823 SIRT7Q9NRC8 400 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 IL36RNQ9UBH0 155 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 FOXJ3Q9UPW0 622 aa9.42□□□□□ -0.9
COL28A1-203ENST00000435823 LSM2Q9Y333 95 aaKnown RBP9.42□□□□□ -0.9
COL28A1-203ENST00000435823 A0A1W2PPK0 400 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 TMEM82A0PJX8 343 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 SIRPB1O00241 398 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 HSMCR30P0CW71 290 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF44P15621 663 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 IGFBP3P17936 291 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-203ENST00000435823 PTGFRP43088 359 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 GPR50Q13585 617 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 DOC2BQ14184 412 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 EDDM3AQ14507 147 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 GRK1Q15835 563 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 KRTAP24-1Q3LI83 254 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 METAP1DQ6UB28 335 aaPredicted RBP9.41□□□□□ -0.9
COL28A1-203ENST00000435823 PDZD9Q8IXQ8 264 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 CHST4Q8NCG5 386 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 ORAI1Q96D31 301 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 DERL3Q96Q80 235 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 TMED9Q9BVK6 235 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 CHST6Q9GZX3 395 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 METTL9Q9H1A3 318 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 NOX4Q9NPH5 578 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 PCDHB16Q9NRJ7 776 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 ING4Q9UNL4 249 aa9.41□□□□□ -0.9
COL28A1-203ENST00000435823 FBN1P35555 2871 aaKnown RBP9.41□□□□□ -0.9
COL28A1-203ENST00000435823 TRAV8-7A0A075B6U6 113 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 hADV38S2A0JD32 116 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 FUOMA2VDF0 154 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 MGST3O14880 152 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 DENRO43583 198 aaKnown RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF780AO75290 641 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 HTR3BO95264 441 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 OR2H2O95918 312 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 CSTBP04080 98 aaKnown RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 MAS1P04201 325 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 PRTN3P24158 256 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 OR3A4PP47883 348 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 GABARAPL2P60520 117 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 MEF2CQ06413 473 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 SCN1BQ07699 218 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 BAMBIQ13145 260 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 TRAM1Q15629 374 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ACSM3Q53FZ2 586 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 TMEM200BQ69YZ2 307 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ELP2Q6IA86 826 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 C17orf107Q6ZR85 190 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 JAGN1Q8N5M9 183 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 Q8N7P7 452 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 NKAIN3Q8N8D7 197 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ZNF48Q96MX3 618 aaPredicted RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 C19orf24Q9BVV8 132 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 UNKLQ9H9P5 680 aaKnown RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ZMAT3Q9HA38 289 aaKnown RBP9.4□□□□□ -0.9
COL28A1-203ENST00000435823 ISYNA1Q9NPH2 558 aa9.4□□□□□ -0.9
COL28A1-203ENST00000435823 SVEP1Q4LDE5 3571 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 MEGF11A6BM72 1044 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 RNASEK-C17orf49H0YIS7 233 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 DEGS1O15121 323 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 PSPNO60542 156 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 MRPS14O60783 128 aaKnown RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 CDRT1O95170 752 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 CCL3L1P16619 93 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 PSMA1P25786 263 aaKnown RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 LMO1P25800 156 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 MAP2K4P45985 399 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 OR3A1P47881 315 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 ERVFRD-1P60508 538 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 MLLT11Q13015 90 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 GPR176Q14439 515 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 ZNF273Q14593 569 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 IL13RA2Q14627 380 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 TBCEQ15813 527 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 TUSC1Q2TAM9 212 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 DEFB112Q30KQ8 113 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 LIPKQ5VXJ0 399 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 ASCL4Q6XD76 172 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 ZNF367Q7RTV3 350 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 CDH26Q8IXH8 852 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 PHC2Q8IXK0 858 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 ZDHHC22Q8N966 263 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 OR4S1Q8NGB4 309 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 OR10K1Q8NGX5 313 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 SPATA3Q8NHX4 192 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 FAM216AQ8WUB2 273 aa9.39□□□□□ -0.91
COL28A1-203ENST00000435823 NR1H4Q96RI1 486 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 NKX3-1Q99801 234 aaPredicted RBP9.39□□□□□ -0.91
COL28A1-203ENST00000435823 TCF7L1Q9HCS4 588 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms