RNA–Protein interactions for RNA: ENST00000425244.6

CUX1-205, Transcript of cut like homeobox 1, humanhuman

TSL 2 BASIC

Gene CUX1, Length 2,776 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-205ENST00000425244 GPR31O00270 319 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 RCC1P18754 421 aaPredicted RBP9.24□□□□□ -0.93
CUX1-205ENST00000425244 CCNOP22674 350 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 SRSF3P84103 164 aaKnown RBP9.24□□□□□ -0.93
CUX1-205ENST00000425244 PMP22Q01453 160 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 ZNF92Q03936 586 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 FOXO1Q12778 655 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 TSPO2Q5TGU0 170 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 PLCXD3Q63HM9 321 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 PIGCQ92535 297 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 ARL11Q969Q4 196 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 FAM173AQ9BQD7 235 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 SMIM3Q9BZL3 60 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 NKX6-2Q9C056 277 aaPredicted RBP9.24□□□□□ -0.93
CUX1-205ENST00000425244 OR2H1Q9GZK4 316 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 HRH4Q9H3N8 390 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 EDARQ9UNE0 448 aa9.24□□□□□ -0.93
CUX1-205ENST00000425244 LSM5Q9Y4Y9 91 aaKnown RBP9.24□□□□□ -0.93
CUX1-205ENST00000425244 ZNF891A8MT65 544 aaPredicted RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 ACTL6AO96019 429 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 SP1P08047 785 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 EIF2S3P41091 472 aaKnown RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 MEOX1P50221 254 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 PIGPP57054 158 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 SURF2Q15527 256 aaPredicted RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 C21orf62-AS1Q17RA5 79 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 ABCA11PQ4W5N1 156 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 PHLDA2Q53GA4 152 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 RPL7L1Q6DKI1 246 aaKnown RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 RTL6Q6ICC9 239 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 CPT1CQ8TCG5 803 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 ADAT1Q9BUB4 502 aaKnown RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 TTTY12Q9BZ98 90 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 LIME1Q9H400 295 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 TREM1Q9NP99 234 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 TIMM10BQ9Y5J6 103 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 RP1L1Q8IWN7 2480 aaPredicted RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 IGKV1-12A0A0C4DH73 117 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 TMEM218A2RU14 115 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 DNASE2O00115 360 aaPredicted RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 IGKV1D-12P01611 117 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 CD46P15529 392 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 CLDN15P56746 228 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 PPA1Q15181 289 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 OR2A2Q6IF42 318 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 SKA3Q8IX90 412 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 SNIP1Q8TAD8 396 aaKnown RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 MRPL24Q96A35 216 aaKnown RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 CPNE2Q96FN4 548 aaPredicted RBP9.23□□□□□ -0.93
CUX1-205ENST00000425244 AQP10Q96PS8 301 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 WNT5BQ9H1J7 359 aa9.23□□□□□ -0.93
CUX1-205ENST00000425244 SHANK1Q9Y566 2161 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 A0A1B0GWJ7 208 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 OR6C6A6NF89 314 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 FGF16O43320 207 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 DNPH1O43598 174 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 FBXO24O75426 580 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 CLN5O75503 358 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 IFNA21P01568 189 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 CTSDP07339 412 aaPredicted RBP9.22□□□□□ -0.93
CUX1-205ENST00000425244 FCGR3AP08637 254 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 ZNF728P0DKX0 622 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 NME2P22392 152 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 NAAAQ02083 359 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 ZNF766Q5HY98 468 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 GGNBP1Q5YKI7 109 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 TMEM88Q6PEY1 159 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 SLC22A25Q6T423 547 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 CCDC54Q8NEL0 328 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 OR10AD1Q8NGE0 317 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 OR5T2Q8NGG2 359 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 SLC5A7Q9GZV3 580 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 DEFB127Q9H1M4 99 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 GPR35Q9HC97 309 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 NECAP2Q9NVZ3 263 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 SLC7A11Q9UPY5 501 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 ST3GAL6Q9Y274 331 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 FAM96BQ9Y3D0 163 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 A0A096LPE4 126 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 A0A1W2PPZ6 126 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 K7EPK0 472 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 AGPAT2O15120 278 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 ATG12O94817 140 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 ZNF708P17019 499 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 BLOC1S1P78537 153 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 SMCO1Q147U7 214 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 GUCA2BQ16661 112 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 PABPC1L2AQ5JQF8 200 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 UQCC3Q6UW78 93 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 CLEC9AQ6UXN8 241 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 Q6ZSR3 168 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 LHFPL2Q6ZUX7 228 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 OSR2Q8N2R0 312 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 FAM71E2Q8N5Q1 922 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 NANPQ8TBE9 248 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 MARS2Q96GW9 593 aaKnown RBP9.22□□□□□ -0.93
CUX1-205ENST00000425244 B4GALT7Q9UBV7 327 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 RELNP78509 3460 aa9.22□□□□□ -0.93
CUX1-205ENST00000425244 SMG1Q96Q15 3661 aaKnown RBP9.21□□□□□ -0.93
CUX1-205ENST00000425244 KLRC4-KLRK1H3BQV0 150 aa9.21□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 59.7 ms