RNA–Protein interactions for RNA: ENST00000423635.5

CHCHD3-202, Transcript of coiled-coil-helix-coiled-coil-helix domain containing 3, humanhuman

TSL 1 (best)

Gene CHCHD3, Length 1,310 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHCHD3-202ENST00000423635 CDK5Q00535 292 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 UBE2V2Q15819 145 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 SPATS1Q496A3 300 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 Q8IYB0 196 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 STPG2Q8N412 459 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 EMG1Q92979 244 aaKnown RBP13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 MAGIXQ9H6Y5 334 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 PALMDQ9NP74 551 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 PCDHB16Q9NRJ7 776 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 IL36RNQ9UBH0 155 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 COPS3Q9UNS2 423 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 KIAA2026Q5HYC2 2103 aa13.14□□□□□ -0.31
CHCHD3-202ENST00000423635 FAM172BPA6NC97 362 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 LOC110117498-PIK3R3F6TDL0 507 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 CCL1P22362 96 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 CDC42P60953 191 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 GK3PQ14409 553 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 KPNB1Q14974 876 aaKnown RBP13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 SLC25A26Q70HW3 274 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 SLC35E3Q7Z769 313 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 FOXRED2Q8IWF2 684 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 OR52A1Q9UKL2 312 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 SIRT4Q9Y6E7 314 aaPredicted RBP13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 R4GMQ9 66 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 TCRBV5S2A0A599 114 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 FUOMA2VDF0 154 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 INMTO95050 263 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 RPLP1P05386 114 aaKnown RBP13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 DUSP1P28562 367 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 APOFQ13790 326 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 PNLIPRP3Q17RR3 467 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 SPIN3Q5JUX0 258 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 CYP2R1Q6VVX0 501 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 LCNL1Q6ZST4 164 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 FAM58AQ8N1B3 248 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 DRAM1Q8N682 238 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 RNF152Q8N8N0 203 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 GIPC3Q8TF64 312 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 CITED4Q96RK1 184 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 ACTR3BQ9P1U1 418 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 IKZF2Q9UKS7 526 aa13.13□□□□□ -0.31
CHCHD3-202ENST00000423635 TRBV2A0A0J9YWF9 115 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 LINC01548A6NM66 108 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 ENTPD6O75354 484 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 NPBWR2P48146 333 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 INSL3P51460 131 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 DEFB136Q30KP8 78 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 UTF1Q5T230 341 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 BCL2L15Q5TBC7 163 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 OR4D6Q8NGJ1 314 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 OR9G1Q8NH87 305 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 RPEQ96AT9 228 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 KRTAP17-1Q9BYP8 105 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 RBFOX1Q9NWB1 397 aaKnown RBP13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 NKX1-2Q9UD57 310 aaPredicted RBP13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 GTF2A1LQ9UNN4 478 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 SNX5Q9Y5X3 404 aa13.12□□□□□ -0.31
CHCHD3-202ENST00000423635 SORL1Q92673 2214 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 CCDC182A6NF36 153 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 CCRL2O00421 344 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 SASH3O75995 380 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 MRPL3P09001 348 aaKnown RBP13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 TMEM11P17152 192 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 ATP6V1B2P21281 511 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 GLIPR1P48060 266 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 ACTR3P61158 418 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 FHL3Q13643 280 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 RBM39Q14498 530 aaKnown RBP13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 C17orf58Q2M2W7 97 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 ZNF260Q3ZCT1 412 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 OR56B4Q8NH76 319 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 APOL4Q9BPW4 351 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 GON7Q9BXV9 100 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 TTTY10Q9BZA0 68 aa13.11□□□□□ -0.31
CHCHD3-202ENST00000423635 A0A1W2PPI3 338 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 AP4M1O00189 453 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 GATBO75879 557 aaKnown RBP13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 ELANEP08246 267 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 OSMP13725 252 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 PTGFRP43088 359 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 AESQ08117 197 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 FOXE3Q13461 319 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 HES1Q14469 280 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 CXorf66Q5JRM2 361 aaPredicted RBP13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 ZNF322Q6U7Q0 402 aaPredicted RBP13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 TOMM40LQ969M1 308 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 BORCS8Q96FH0 119 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 CHST5Q9GZS9 411 aa13.1□□□□□ -0.31
CHCHD3-202ENST00000423635 ODAMA1E959 279 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 ZNF729A6NN14 1252 aaPredicted RBP13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 SIRPB1O00241 398 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 SH2D1BO14796 132 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 MAGEB4O15481 346 aaPredicted RBP13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 OR2H2O95918 312 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 CSN2P05814 226 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 PRKACAP17612 351 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 BCL3P20749 454 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 CXCR4P61073 352 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 GPR50Q13585 617 aa13.09□□□□□ -0.31
CHCHD3-202ENST00000423635 EBI3Q14213 229 aa13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms