RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 OR11H1Q8NG94 326 aa7.83□□□□□ -1.16
LIG3-202ENST00000378526 OR11H2Q8NH07 326 aa7.83□□□□□ -1.16
LIG3-202ENST00000378526 DERL3Q96Q80 235 aa7.83□□□□□ -1.16
LIG3-202ENST00000378526 SLAMF8Q9P0V8 285 aa7.83□□□□□ -1.16
LIG3-202ENST00000378526 EMCNQ9ULC0 261 aa7.83□□□□□ -1.16
LIG3-202ENST00000378526 PHF3Q92576 2039 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 MEX3AA1L020 520 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 CDC14CA4D256 554 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 LANCL1O43813 399 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GAPDHP04406 335 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 DNM1P46Q6ZS02 220 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 SYT8Q8NBV8 401 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 OR4X2Q8NGF9 303 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 PTX4Q96A99 478 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 C20orf27Q9GZN8 174 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 WNT5BQ9H1J7 359 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 FZD8Q9H461 694 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 DHCR7Q9UBM7 475 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 CACNA1IQ9P0X4 2223 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 ANKRD20A5PA0PJZ0 165 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 A8MWV9 139 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GLI4P10075 376 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 HOXA4Q00056 320 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 HIST1H1AQ02539 215 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 CT83Q5H943 113 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 ZNF324BQ6AW86 544 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 ZC3H3Q8IXZ2 948 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 HMGCLL1Q8TB92 370 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 NRIP2Q9BQI9 281 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 ANKRD10Q9NXR5 420 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GBF1Q92538 1859 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 TRGV10A0A0A0MS01 117 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 TMEM30CPA0ZSE6 113 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 SLC2A10O95528 541 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 C1orf105O95561 183 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 IGFBP4P22692 258 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GLIPR1P48060 266 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 SPANXN1Q5VSR9 72 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 PTOV1Q86YD1 416 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 OR1K1Q8NGR3 316 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 OR1B1Q8NGR6 318 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 TMEM40Q8WWA1 233 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 ZNF414Q96IQ9 312 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 MS4A7Q9GZW8 240 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 S1PR5Q9H228 398 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 AJAP1Q9UKB5 411 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 TUBGCP6Q96RT7 1819 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 TRAV39A0A0B4J263 110 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 HTR6P50406 440 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 CACNG7P62955 275 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 HYAL1Q12794 435 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 VHLLQ6RSH7 139 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 NEU3Q9UQ49 428 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 MMACHCQ9Y4U1 282 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 ATG2BQ96BY7 2078 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 BCL9O00512 1426 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 LOC105371267A0A1B0GV96 52 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 M0R135 149 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GDF1P27539 372 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 MFAP4P55083 255 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 HOXC5Q00444 222 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 NPY5RQ15761 445 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GAGE13Q4V321 117 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 MRPL30Q8TCC3 161 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 ZNF799Q96GE5 643 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 C20orf141Q9NUB4 165 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 LAMTOR2Q9Y2Q5 125 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 NALCNQ8IZF0 1738 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 RBMY1BA6NDE4 496 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 RBMY1EA6NEQ0 496 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 RBMY1DP0C7P1 496 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 RBMY1A1P0DJD3 496 aaKnown RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 RBMY1CP0DJD4 496 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 TMEM176BQ3YBM2 270 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 SPNS2Q8IVW8 549 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 CYB561D1Q8N8Q1 229 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 GPR84Q9NQS5 396 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 BEX4Q9NWD9 120 aaPredicted RBP7.82□□□□□ -1.16
LIG3-202ENST00000378526 KCNMB2Q9Y691 235 aa7.82□□□□□ -1.16
LIG3-202ENST00000378526 A0A1B0GWA3 101 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 TMEM88BA6NKF7 163 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 B4GALT3O60512 393 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 MORN3Q6PF18 240 aaPredicted RBP7.81□□□□□ -1.16
LIG3-202ENST00000378526 NEU1Q99519 415 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 LDB3O75112 727 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 MISP3Q96FF7 219 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 NTNG1Q9Y2I2 539 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 USP3Q9Y6I4 520 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 CLTCQ00610 1675 aaKnown RBP7.81□□□□□ -1.16
LIG3-202ENST00000378526 TMEM250H0YL14 139 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 PLPP2O43688 288 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 SLC25A20O43772 301 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 CD46P15529 392 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 FUT2Q10981 343 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 PSG5Q15238 335 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 C11orf40Q8WZ69 217 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 SPSB1Q96BD6 273 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 KLRG1Q96E93 195 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 WNT1P04628 370 aa7.81□□□□□ -1.16
LIG3-202ENST00000378526 MGPP08493 103 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms