RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 PRRT1Q99946 306 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 NRIP2Q9BQI9 281 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 RBM24Q9BX46 236 aaKnown RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 POFUT1Q9H488 388 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 TUBA4BQ9H853 241 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 SLC2A8Q9NY64 477 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 RCC2Q9P258 522 aaKnown RBP12.34□□□□□ -0.43
HMGA1-203ENST00000374116 GHRLQ9UBU3 117 aa12.34□□□□□ -0.43
HMGA1-203ENST00000374116 SS18L1O75177 396 aaPredicted RBP12.33□□□□□ -0.44
HMGA1-203ENST00000374116 HCKP08631 526 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 ANOS1P23352 680 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 MRPS34P82930 218 aaKnown RBP12.33□□□□□ -0.44
HMGA1-203ENST00000374116 GUSBP1Q15486 140 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 OR2A2Q6IF42 318 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 GLIPR1L1Q6UWM5 242 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 NAA40Q86UY6 237 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 KCNG3Q8TAE7 436 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 CA5BP1Q8WTZ4 195 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 RNF141Q8WVD5 230 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 TCTEX1D2Q8WW35 142 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 SOX7Q9BT81 388 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 ULBP2Q9BZM5 246 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 OPA3Q9H6K4 179 aa12.33□□□□□ -0.44
HMGA1-203ENST00000374116 OR4E1P0C645 316 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 SELLP14151 372 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF44P15621 663 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 TBPP20226 339 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 GRNP28799 593 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 OTX1P32242 354 aaPredicted RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 RSPO1Q2MKA7 263 aaPredicted RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 RNASE10Q5GAN6 216 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 FAM76BQ5HYJ3 339 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 FAM27BQ5VT28 67 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF610Q8N9Z0 462 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 STEAP2Q8NFT2 490 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 SSC4DQ8WTU2 575 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 GTF3AQ92664 365 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 CMBLQ96DG6 245 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF837Q96EG3 531 aaPredicted RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 MALSU1Q96EH3 234 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 SLC6A7Q99884 636 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 CHST6Q9GZX3 395 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 TMPRSS5Q9H3S3 457 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 BCO1Q9HAY6 547 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 COMMD9Q9P000 198 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 PRSS50Q9UI38 385 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 A1L4Q6 167 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 MT-ND4LP03901 98 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 GSTP1P09211 210 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 TPT1P13693 172 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 CHRNB4P30926 498 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 THBS4P35443 961 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 UBE2MP61081 183 aaKnown RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 GFOD2Q3B7J2 385 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 Q6ZSR3 168 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 LRRC18Q8N456 261 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 SPTSSAQ969W0 71 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 HIST1H2BAQ96A08 127 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 C10orf35Q96D05 121 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 PIK3IP1Q96FE7 263 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 C1orf147Q96MC9 270 aaPredicted RBP12.32□□□□□ -0.44
HMGA1-203ENST00000374116 SELENOIQ9C0D9 397 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 LPAR5Q9H1C0 372 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 V9GYS6 101 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 LRRK2Q5S007 2527 aa12.32□□□□□ -0.44
HMGA1-203ENST00000374116 F5H5K5 113 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 CDC14BO60729 498 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 DHRS3O75911 302 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 CGAP01215 116 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 MUC1P15941 1255 aaPredicted RBP12.31□□□□□ -0.44
HMGA1-203ENST00000374116 GNB3P16520 340 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 OR3A4PP47883 348 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 SLC6A9P48067 706 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF124Q15973 351 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 OR2B11Q5JQS5 317 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 DNLZQ5SXM8 178 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 ATPAF1Q5TC12 328 aaPredicted RBP12.31□□□□□ -0.44
HMGA1-203ENST00000374116 TMEM200AQ86VY9 491 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 STX12Q86Y82 276 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 PNLDC1Q8NA58 520 aaKnown RBP12.31□□□□□ -0.44
HMGA1-203ENST00000374116 OR4S1Q8NGB4 309 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 OR5AP2Q8NGF4 316 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 OR13C8Q8NGS7 320 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 LYZL4Q96KX0 146 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 SPACA5Q96QH8 159 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 GPER1Q99527 375 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 SFXN3Q9BWM7 321 aa12.31□□□□□ -0.44
HMGA1-203ENST00000374116 FLNBO75369 2602 aaKnown RBP12.31□□□□□ -0.44
HMGA1-203ENST00000374116 IGKV3D-15A0A087WSY6 115 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 TRBV6-7A0A0A0MS04 114 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 IGKV1-9A0A0C4DH69 117 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 CLN5O75503 358 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 MPIG6BO95866 241 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 OPRM1P35372 400 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 GPX4P36969 197 aaPredicted RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 FOXG1P55316 489 aaPredicted RBP12.3□□□□□ -0.44
HMGA1-203ENST00000374116 MST1LQ2TV78 715 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 SCGB2B2Q4G0G5 96 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 C9orf135Q5VTT2 229 aa12.3□□□□□ -0.44
HMGA1-203ENST00000374116 ZNF474Q6S9Z5 364 aaPredicted RBP12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms