RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 SEBOXQ9HB31 216 aaPredicted RBP18.38■□□□□ 0.53
SHMT1-203ENST00000354098 MMP26Q9NRE1 261 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 PCDHB16Q9NRJ7 776 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 GLS2Q9UI32 602 aa18.38■□□□□ 0.53
SHMT1-203ENST00000354098 ARHGAP32A7KAX9 2087 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 MALRD1Q5VYJ5 2156 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 A0A0B4J203 849 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 GEMIN2O14893 280 aaKnown RBP18.37■□□□□ 0.53
SHMT1-203ENST00000354098 CD5LO43866 347 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 PSPNO60542 156 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 GABARAPO95166 117 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 BPNT1O95861 308 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 ARSBP15848 533 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 MGMTP16455 207 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 CAPZA1P52907 286 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 UNC119Q13432 240 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 C17orf107Q6ZR85 190 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 BIVMQ86UB2 503 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 SHARPINQ9H0F6 387 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 ABCA1O95477 2261 aa18.37■□□□□ 0.53
SHMT1-203ENST00000354098 NOTOA8MTQ0 251 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 C22orf46C9J442 243 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 AIPO00170 330 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 DEGS1O15121 323 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 TK1P04183 234 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 ZNF44P15621 663 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 NDUFB7P17568 137 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 RPS19P39019 145 aaKnown RBP18.36■□□□□ 0.53
SHMT1-203ENST00000354098 TAF9Q16594 264 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 C2orf76Q3KRA6 126 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 NHLRC3Q5JS37 347 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 CLEC9AQ6UXN8 241 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 Q71RC1 249 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-203ENST00000354098 BTN2A1Q7KYR7 527 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 CLVS1Q8IUQ0 354 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-203ENST00000354098 TMEM186Q96B77 213 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 FAM3DQ96BQ1 224 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 SELENOIQ9C0D9 397 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 CHST6Q9GZX3 395 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 HIF1ANQ9NWT6 349 aa18.36■□□□□ 0.53
SHMT1-203ENST00000354098 POLR3KQ9Y2Y1 108 aaPredicted RBP18.36■□□□□ 0.53
SHMT1-203ENST00000354098 K7N7A8 449 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 MPIG6BO95866 241 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 GABRR1P24046 479 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 LMO1P25800 156 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 CFPP27918 469 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 PAX2Q02962 417 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 IL13RA2Q14627 380 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 SFXN4Q6P4A7 337 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 MRPS24Q96EL2 167 aaKnown RBP18.35■□□□□ 0.53
SHMT1-203ENST00000354098 CST11Q9H112 138 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 DAPK2Q9UIK4 370 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 SVEP1Q4LDE5 3571 aa18.35■□□□□ 0.53
SHMT1-203ENST00000354098 LOC105371242A0A075B767 164 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 TMEM14DPA8MWL7 114 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 SLC33A1O00400 549 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-203ENST00000354098 PLA2G7Q13093 441 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 OR4S1Q8NGB4 309 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 KCNG3Q8TAE7 436 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 H1FXQ92522 213 aaKnown RBP18.34■□□□□ 0.53
SHMT1-203ENST00000354098 SNX22Q96L94 193 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 LIN7BQ9HAP6 207 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 OR5V1Q9UGF6 321 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 TRAV24A0A0B4J272 114 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 OR7C1O76099 320 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-203ENST00000354098 SERPINB10P48595 397 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 DACT3Q96B18 629 aaPredicted RBP18.34■□□□□ 0.53
SHMT1-203ENST00000354098 Q96M66 194 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 FAM234AQ9H0X4 552 aa18.34■□□□□ 0.53
SHMT1-203ENST00000354098 TRAV20A0A0B4J274 112 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 HSPB6O14558 160 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 OR3A1P47881 315 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 DVL1P1P54792 670 aaPredicted RBP18.33■□□□□ 0.52
SHMT1-203ENST00000354098 GLCCI1Q86VQ1 547 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 OR8H2Q8N162 312 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 CYYR1Q96J86 154 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 TMEM59Q9BXS4 323 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 PPA2Q9H2U2 334 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 YAE1D1Q9NRH1 226 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP18.33■□□□□ 0.521e-8■■■■□ 21.6
SHMT1-203ENST00000354098 TLN2Q9Y4G6 2542 aa18.33■□□□□ 0.52
SHMT1-203ENST00000354098 TMEM272A0A1B0GTI8 110 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 LDLRAD4O15165 306 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 RPS27AP62979 156 aaKnown RBP18.32■□□□□ 0.52
SHMT1-203ENST00000354098 GRK1Q15835 563 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 CD276Q5ZPR3 534 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 BRICD5Q6PL45 260 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 BPIFB2Q8N4F0 458 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 CHST4Q8NCG5 386 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 OR4M1Q8NGD0 313 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 RAB40AQ8WXH6 277 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 NICN1Q9BSH3 213 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 DCTN5Q9BTE1 182 aa18.32■□□□□ 0.52
SHMT1-203ENST00000354098 RPUSD1Q9UJJ7 312 aaKnown RBP18.32■□□□□ 0.52
SHMT1-203ENST00000354098 IGHV2-70DA0A0C4DH43 119 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 GPR37O15354 613 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 IL1AP01583 271 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 MPV17LQ2QL34 196 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 IDNKQ5T6J7 187 aa18.31■□□□□ 0.52
SHMT1-203ENST00000354098 OR2W3Q7Z3T1 314 aa18.31■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms