RNA–Protein interactions for RNA: ENST00000342220.9

COL18A1-201, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 2

Gene COL18A1, Length 3,386 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-201ENST00000342220 MED12LQ86YW9 2145 aa11.34□□□□□ -0.59
COL18A1-201ENST00000342220 HLA-AP01891 365 aaKnown RBP11.33□□□□□ -0.6
COL18A1-201ENST00000342220 MTCP1P56278 107 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 CDNFQ49AH0 187 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 CLEC9AQ6UXN8 241 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 OR5M8Q8NGP6 311 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 OPN3Q9H1Y3 402 aaPredicted RBP11.33□□□□□ -0.6
COL18A1-201ENST00000342220 OR10A2Q9H208 303 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 A0A087X0M5 115 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 A0A1B0GX30 115 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 C9orf170A2RU37 121 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 FAM221AA4D161 298 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 DUSP1P28562 367 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 ARFRP1Q13795 201 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF584Q8IVC4 421 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 KDF1Q8NAX2 398 aaPredicted RBP11.33□□□□□ -0.6
COL18A1-201ENST00000342220 CNTNAP3BQ96NU0 1288 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 SF3B5Q9BWJ5 86 aaKnown RBP11.33□□□□□ -0.6
COL18A1-201ENST00000342220 USF3Q68DE3 2245 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 ACTL6AO96019 429 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 HGFACQ04756 655 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 FJX1Q86VR8 437 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 CPEB3Q8NE35 698 aaKnown RBP11.33□□□□□ -0.6
COL18A1-201ENST00000342220 CCDC54Q8NEL0 328 aa11.33□□□□□ -0.6
COL18A1-201ENST00000342220 KANTRA0A1W2PQU2 76 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 CD74P04233 296 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 CELA3BP08861 270 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 MGMTP16455 207 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 CPT2P23786 658 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 MMP16P51512 607 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 PLCXD3Q63HM9 321 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 FAM180AQ6UWF9 173 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 MRPL21Q7Z2W9 205 aaKnown RBP11.32□□□□□ -0.6
COL18A1-201ENST00000342220 SARAFQ96BY9 339 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 MYO18BQ8IUG5 2567 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 KMT2EQ8IZD2 1858 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 A0A1B0GTI1 187 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF503-AS2A6NEH8 195 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 YIF1AO95070 293 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 SELEP16581 610 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 GRB2P62993 217 aaKnown RBP11.32□□□□□ -0.6
COL18A1-201ENST00000342220 TRAPPC6BQ86SZ2 158 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 C9orf106Q8NAJ2 232 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 NEK7Q8TDX7 302 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 NUDCD2Q8WVJ2 157 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 NABP1Q96AH0 204 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 OR2H1Q9GZK4 316 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 FAM96BQ9Y3D0 163 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 ESPL1Q14674 2120 aa11.32□□□□□ -0.6
COL18A1-201ENST00000342220 MEGF11A6BM72 1044 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF205O95201 554 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 CD8AP01732 235 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 CD37P11049 281 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 MRPS34P82930 218 aaKnown RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 HIST1H2BAQ96A08 127 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 MRGPRFQ96AM1 343 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 RAB3CQ96E17 227 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 FOXD3Q9UJU5 478 aaPredicted RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 MRPS28Q9Y2Q9 187 aaKnown RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 RHBDD3Q9Y3P4 386 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 MED6O75586 246 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 CSTBP04080 98 aaKnown RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 GNB3P16520 340 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 S100A2P29034 98 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 DDTP30046 118 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 AGTR1P30556 359 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 APLNRP35414 380 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ATP1B3P54709 279 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF92Q03936 586 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 PPP1R1AQ13522 171 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 RNASE10Q5GAN6 216 aaKnown RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 C1orf100Q5SVJ3 147 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 FAM27BQ5VT28 67 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ADAM5Q6NVV9 412 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 TMEM200AQ86VY9 491 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 CXorf67Q86X51 503 aaPredicted RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ADPRHL1Q8NDY3 354 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 PPP1R1CQ8WVI7 109 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ASB13Q8WXK3 278 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 TMEM54Q969K7 222 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ATG101Q9BSB4 218 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 NICN1Q9BSH3 213 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 CST11Q9H112 138 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 SMCO4Q9NRQ5 59 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 A0A0D9SG52 128 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 A6NLC8 198 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF850A8MQ14 1090 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 RAB27BO00194 218 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 KCNAB3O43448 404 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ZNF260Q3ZCT1 412 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 OR2T2Q6IF00 324 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 C11orf87Q6NUJ2 197 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 LYPD6Q86Y78 171 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 PAQR4Q8N4S7 273 aaPredicted RBP11.31□□□□□ -0.6
COL18A1-201ENST00000342220 KCNRGQ8N5I3 272 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 TMEM104Q8NE00 496 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 AQP3Q92482 292 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 ISOC2Q96AB3 205 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 WNT5BQ9H1J7 359 aa11.31□□□□□ -0.6
COL18A1-201ENST00000342220 COMMD9Q9P000 198 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms