RNA–Protein interactions for RNA: ENST00000339997.8

RTN3-202, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 4,886 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-202ENST00000339997 IQCJQ1A5X6 159 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 UQCC3Q6UW78 93 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 ZDHHC23Q8IYP9 409 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 TOX2Q96NM4 488 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 RTL8AQ9BWD3 113 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 ICAM5Q9UMF0 924 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 MGAMO43451 1857 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 RBFOX3A6NFN3 312 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 TUBAL3A6NHL2 446 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 NKX2-2O95096 273 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 ZNF32P17041 273 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 DYNLT3P51808 116 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 HLA-DRB3P79483 266 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 SHHQ15465 462 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 MOGAT2Q3SYC2 334 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 Q6ZN92 141 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 STPG2Q8N412 459 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 SSMEM1Q8WWF3 244 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 C19orf43Q9BQ61 176 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 TWSG1Q9GZX9 223 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 TLNRD1Q9H1K6 362 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 ZNF275Q9NSD4 429 aaPredicted RBP7.71□□□□□ -1.18
RTN3-202ENST00000339997 SIT1Q9Y3P8 196 aa7.71□□□□□ -1.18
RTN3-202ENST00000339997 IGLV3-16A0A075B6K0 115 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 RRP8O43159 456 aaKnown RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 OLFM2O95897 454 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ICAM2P13598 275 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 S100A4P26447 101 aaKnown RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 TM4SF4P48230 202 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PRICKLE4Q2TBC4 344 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 LAIR2Q6ISS4 152 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 MRPL54Q6P161 138 aaKnown RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 ARHGEF39Q8N4T4 335 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 OR10X1Q8NGY0 326 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 SLC2A9Q9NRM0 540 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PSG11Q9UQ72 335 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 HMSDA8MTL9 139 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 CD27P26842 260 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 CDC34P49427 236 aaPredicted RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 PNLIPRP2P54317 469 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 TPPP2P59282 170 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PAX5Q02548 391 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ZNF273Q14593 569 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 MICBQ29980 383 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 MUC15Q8N387 334 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 KDF1Q8NAX2 398 aaPredicted RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 NPEPL1Q8NDH3 523 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ST6GALNAC3Q8NDV1 305 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ZDHHC16Q969W1 377 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 FOXB1Q99853 325 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 OR1A1Q9P1Q5 309 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 LPAR3Q9UBY5 353 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 BDP1A6H8Y1 2624 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 C3orf85A0A1B0GTC6 90 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 C3orf80F5H4A9 247 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 TNFRSF10CO14798 259 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 RAB29O14966 203 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 CTXN2P0C2S0 81 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PSG6Q00889 435 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 SLC38A11Q08AI6 406 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 KLF9Q13886 244 aaPredicted RBP7.7□□□□□ -1.18
RTN3-202ENST00000339997 MESTQ5EB52 335 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 VWA1Q6PCB0 445 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 LHFPL2Q6ZUX7 228 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 OR1L4Q8NGR5 311 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 MCHR2Q969V1 340 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PHYHIPLQ96FC7 376 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 TMEM208Q9BTX3 173 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 TEX101Q9BY14 249 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 TMEM140Q9NV12 185 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 DTX4Q9Y2E6 619 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PIKFYVEQ9Y2I7 2098 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 PSME4Q14997 1843 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 SPRY3O43610 288 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 VAMP5O95183 116 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ACTL6AO96019 429 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 KLK2P20151 261 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 APCDD1LQ8NCL9 501 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 VN1R17PQ8TDU5 208 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 GPR87Q9BY21 358 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 FSCN3Q9NQT6 498 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 ZNF391Q9UJN7 358 aa7.7□□□□□ -1.18
RTN3-202ENST00000339997 LINC00862A6NCI5 91 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 ZIC3O60481 467 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 MUC1P15941 1255 aaPredicted RBP7.69□□□□□ -1.18
RTN3-202ENST00000339997 LPAR6P43657 344 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 SUB1P53999 127 aaKnown RBP eCLIP7.69□□□□□ -1.184e-7■■□□□ 11.5
RTN3-202ENST00000339997 RAG2P55895 527 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 Q3ZCU0 254 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 STUMQ69YW2 141 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 TRAT1Q6PIZ9 186 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 REC114Q7Z4M0 266 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 NOL4LQ96MY1 436 aaPredicted RBP7.69□□□□□ -1.18
RTN3-202ENST00000339997 GHITMQ9H3K2 345 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 KLHDC2Q9Y2U9 406 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 H3BQ15 152 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 ZNF253O75346 499 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 GCGP01275 180 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 IGHEP01854 428 aa7.69□□□□□ -1.18
RTN3-202ENST00000339997 FHITP49789 147 aa7.69□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 57.6 ms